DR908462

Overview
NameDR908462
Unique NameDR908462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12048 contig Csv1_Contig12048:550..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908462 vs. ExPASy Swiss-Prot
Match: THIJ_SALTY (Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 3 
Query:  252 SPQILVPIANGSEEREAVMIIDILRRAKANVVVASV--EDKLEILASRQIKLVADVLIDEAAKLSYDLIVLPGGLGGAQAFAKSDKLVNMLKKQKESIDLM---------VLYVHPSFSVG 581
            S Q LV +A GSEE EAV  ID+L R   +V  ASV  +  L I+ SR +KL+AD  + E A   YD+IVLPGG+ GA+ F  S  LV  +K+   S  ++         VL  H  F +G
Sbjct:    2 SAQALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIG 122
[Close]
BLAST of DR908462 vs. ExPASy Swiss-Prot
Match: THIJ_ECOLI (Protein thiJ OS=Escherichia coli (strain K12) GN=thiJ PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 50/121 (41.32%), Postives = 64/121 (52.89%), Query Frame = 3 
Query:  252 SPQILVPIANGSEEREAVMIIDILRRAKANVVVASV--EDKLEILASRQIKLVADVLIDEAAKLSYDLIVLPGGLGGAQAFAKSDKLVNMLKKQKESIDLM---------VLYVHPSFSVG 581
            S   LV +A GSEE EAV  ID+L R    V  ASV  +  L I  SR +KL+AD  + E A   YD+IVLPGG+ GA+ F  S  LV  +K+   S  ++         VL  H  F +G
Sbjct:    2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIG 122
The following BLAST results are available for this feature:
BLAST of DR908462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
THIJ_SALTY4.383e-1342.15Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=... [more]
THIJ_ECOLI4.846e-1241.32Protein thiJ OS=Escherichia coli (strain K12) GN=t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16590 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908462 ID=DR908462; Name=DR908462; organism=Citrus sinensis; type=EST; length=635bp
GTTATCCGTCATTTATGGAGCAATTAGCTCCTGCTTGTGCATCAACTGTT
GAATCAAGAGTACAGCAGGATGGTAAAGTTGTTACGAGTCGTGGACCTGG
CACTACTATGGAGTTTGCTGTTGCACTTGTTGAGCAGTTGTATGGGAAAG
AGAGAGCTGATGAAGTTTCTGGGCCACTGGTAATGCGTGCAAATCATGGA
GATGAATACACTATTGCTGAATTCAATCCAATTCAGTGGACATTTGACAA
TTCTCCCCAGATTCTTGTGCCTATTGCAAATGGTTCGGAGGAGAGGGAAG
CTGTTATGATAATTGATATTCTGCGACGAGCTAAAGCAAATGTTGTAGTT
GCATCAGTTGAGGATAAACTAGAAATTCTGGCTTCTCGTCAAATTAAATT
AGTGGCAGATGTGCTCATTGATGAGGCAGCTAAACTGTCGTATGATTTAA
TTGTCTTGCCAGGTGGACTTGGTGGCGCTCAAGCATTTGCGAAGTCAGAT
AAATTGGTGAATATGCTAAAGAAGCAAAAGGAATCAATAGACCTTATGGT
GCTATATGTGCATCCCAGCTTTAGTGTTGGAGCCCATGGCTTACTCAAGG
GTAAAAAGCTACAGCTTTTCCTGCTATGTGCAACA
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