DR908460

Overview
NameDR908460
Unique NameDR908460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:447..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.789e-76
Identity = 138/160 (86.25%), Postives = 142/160 (88.75%), Query Frame = 3
Query:    3 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 482
            AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAY            KDEKSMK+ KLKE+KNGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct:  114 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.610e-74
Identity = 134/160 (83.75%), Postives = 140/160 (87.50%), Query Frame = 3
Query:    3 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 482
            AIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK  GGSG+PAY            KDEKS+K+ KLKEVKNGRLAMLAILGYF+QGLVTGVGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct:  116 AIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 58/153 (37.91%), Postives = 79/153 (51.63%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 464
            + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y    G+  Y              E      K KE+ NGRLAMLA LG+ VQ  VTG GP++NLL HL+DP +N ++
Sbjct:  111 LLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGGIFNPLNFAPTQEA-----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   18 ILGKAGLIPQE--TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 473
            +LG AG++  E  T++          AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y   +G+  Y              E      K KE+ NGRLAMLA LG+ +Q  VTG GP+ NLL H++DP +N ++ +L
Sbjct:  103 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16
Identity = 55/161 (34.16%), Postives = 76/161 (47.20%), Query Frame = 3
Query:   12 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 446
            PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct:  124 PELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 59/161 (36.65%), Postives = 82/161 (50.93%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  113 VFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANN 253          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 57/161 (35.40%), Postives = 75/161 (46.58%), Query Frame = 3
Query:   18 ILGKAGLIPQE--TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 446
            +LG AG+   E  T +    T     AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct:  115 MLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 59/161 (36.65%), Postives = 82/161 (50.93%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   85 VFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 59/161 (36.65%), Postives = 82/161 (50.93%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  111 VFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 59/161 (36.65%), Postives = 82/161 (50.93%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  111 VFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
The following BLAST results are available for this feature:
BLAST of DR908460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB13_SOLLC2.789e-7686.25Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.610e-7483.75Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH5.910e-1837.91Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA2.933e-1737.01Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB12_SOLLC3.243e-1634.16Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB26_PETSP4.235e-1636.65Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB12_PETHY4.235e-1635.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC5.532e-1636.65Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_ORYSJ5.532e-1636.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.532e-1636.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16588 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-46_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908460 ID=DR908460; Name=DR908460; organism=Citrus sinensis; type=EST; length=636bp
GAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAA
ACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATA
CAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCA
TGGGATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCA
ATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGG
CGATCCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGA
AAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGA
AGATTGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTAC
AGGAGTTGGGCCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTCA
ACAACAATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTG
TTCATTGCTTGGAATTATATATTCCAAGCCTTGTCATCCCCCACTCTGTT
CTATTCTACTTTCCCCATTGTAAAATTATCTATGTGAAAAGTGAATGTAA
CTTGGCGGAAATGACATGTTAATTGCTAAAAAAAAA
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