DR908452

Overview
NameDR908452
Unique NameDR908452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6355 contig Csv1_Contig6355:1..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_ARATH (V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.421e-56
Identity = 106/126 (84.13%), Postives = 119/126 (94.44%), Query Frame = 3
Query:  189 MAGRAQIATKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVA 566
            MAGRA I  ++SALIAMIADEDTV GFL+AGVGNVD+RRKTNYLIVDSKTTV+ IEDAFKEF+ ++DIAI+L+SQY+ANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LFSAESV+
Sbjct:    1 MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFKEFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVS 126          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_DICDI (V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.949e-33
Identity = 70/120 (58.33%), Postives = 93/120 (77.50%), Query Frame = 3
Query:  207 IATKS---SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 557
            +ATKS   +AL+A+I DED VTGFLLAGVG  D ++  N+L+VDSKT+   IE AFK FTT+ DIAI++I+Q VA+ IR+L+D Y++ IP ILEIPSKDHPYDP  DSV+ +VK +  ++
Sbjct:    1 MATKSLSETALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAIIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKMTGSD 120          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_RAT (V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.261e-32
Identity = 64/125 (51.20%), Postives = 91/125 (72.80%), Query Frame = 3
Query:  189 MAGRAQIATKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 563
            MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F+AE +
Sbjct:    1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_MOUSE (V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.261e-32
Identity = 64/125 (51.20%), Postives = 91/125 (72.80%), Query Frame = 3
Query:  189 MAGRAQIATKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 563
            MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F+AE +
Sbjct:    1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_CAEEL (Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.264e-32
Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = 3
Query:  228 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 557
            ++A+I DEDTV GFLL GVG ++  RK NYLIVD +TTV+ IE+AF  F  ++DIAI+LI+Q++A MIR+ VD++ + IPA+LEIPSK+ PYDP+ DS+L+R + LF+ E
Sbjct:    9 ILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_BOVIN (V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.264e-32
Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 3
Query:  189 MAGRAQIATKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 563
            MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R + +F+AE +
Sbjct:    1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_HUMAN (V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.487e-32
Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 3
Query:  189 MAGRAQIATKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 563
            MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R + +F+AE +
Sbjct:    1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_ANOGA (V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.799e-30
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  201 AQIATKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGR 575
            A ++     LI++I DEDT  GFLL GVG ++  R  N+++VD  T V  IED FK F  ++DI I+LI+Q  A +IR ++DS+  P PA+LEIPSKDHPYD + DS+L R K +F+ E + + R
Sbjct:    2 ALLSAMKGKLISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILINQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_XENLA (V-type proton ATPase subunit F (Fragment) OS=Xenopus laevis GN=atp6s14 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.817e-29
Identity = 55/109 (50.46%), Postives = 82/109 (75.23%), Query Frame = 3
Query:  237 MIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 563
            +I DEDTVTGFLL G+G ++  RK N+L+V+ +T+V  IE+ F+ F  ++DI I+LI+Q++A MIR ++D++   IPA+LEIPSK+HPYD   DS+L R K +F+ E +
Sbjct:    1 VIGDEDTVTGFLLGGIGELNKNRKPNFLVVEKETSVTEIEETFRSFLNRDDIGIILINQFIAEMIRHVIDTHTISIPAVLEIPSKEHPYDATKDSILRRAKGMFTMEDL 109          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_MANSE (V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.817e-29
Identity = 55/118 (46.61%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  210 ATKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 563
            A     LI++I DEDT  GFLL G+G ++  R  N+++VD  T V  IE+ FK F  ++DI I+LI+Q VA ++R ++D++  P+P++LEIPSKDHPYD + DS+L R K +F+ E +
Sbjct:    5 AAVKGKLISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFVKRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAKGMFNPEDL 122          
The following BLAST results are available for this feature:
BLAST of DR908452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF_ARATH9.421e-5684.13V-type proton ATPase subunit F OS=Arabidopsis thal... [more]
VATF_DICDI2.949e-3358.33V-type proton ATPase subunit F OS=Dictyostelium di... [more]
VATF_RAT3.261e-3251.20V-type proton ATPase subunit F OS=Rattus norvegicu... [more]
VATF_MOUSE3.261e-3251.20V-type proton ATPase subunit F OS=Mus musculus GN=... [more]
VATF_CAEEL7.264e-3257.27Probable V-type proton ATPase subunit F OS=Caenorh... [more]
VATF_BOVIN7.264e-3250.40V-type proton ATPase subunit F OS=Bos taurus GN=AT... [more]
VATF_HUMAN9.487e-3250.40V-type proton ATPase subunit F OS=Homo sapiens GN=... [more]
VATF_ANOGA6.799e-3048.00V-type proton ATPase subunit F OS=Anopheles gambia... [more]
VATF_XENLA9.817e-2950.46V-type proton ATPase subunit F (Fragment) OS=Xenop... [more]
VATF_MANSE9.817e-2946.61V-type proton ATPase subunit F OS=Manduca sexta GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16580 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908452 ID=DR908452; Name=DR908452; organism=Citrus sinensis; type=EST; length=638bp
GTGACATTCACTCATACACACCTACGCCCACGCTGCCGCTGCCGTCACTT
CCGTTCAAGTGTGCCACTCTGCAACTTCTAGTCGTTCTCGATTTGCTTCC
TCGTTCCAGCTGCTGTCGTCTCTGCCATCGAAGCCTCCGGCGTCGTTCGC
CGTCGTCAGCCACACAAGTTCAATCAATTTAAATTTAAATGGCTGGCAGA
GCTCAAATCGCTACCAAGAGTTCGGCCCTTATTGCCATGATTGCAGATGA
GGATACTGTAACTGGATTTTTGCTGGCTGGAGTGGGTAATGTTGATTTGC
GGAGAAAAACAAACTATCTTATTGTTGATTCAAAAACTACGGTGAAAGCA
ATTGAAGATGCATTCAAAGAGTTTACAACAAAGGAAGACATTGCCATTGT
TTTAATCAGTCAATACGTTGCGAACATGATAAGGTTCTTAGTTGACAGCT
ACAACAAGCCAATTCCAGCAATATTGGAGATTCCTTCTAAGGACCATCCG
TATGACCCTGCTCATGATTCAGTTCTTTCACGAGTGAAAAACCTTTTCTC
TGCAGAGTCCGTTGCATCTGGAAGGCGTTGATGATTCCACAATGTCCATT
TATCAAATTGTAGCATGATACTGATAAAGACTGCTAGT
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