DR908451

Overview
NameDR908451
Unique NameDR908451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig101 contig Csv1_Contig101:126..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908451 vs. ExPASy Swiss-Prot
Match: LPXK_HALOH (Tetraacyldisaccharide 4'-kinase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=lpxK PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 56/172 (32.56%), Postives = 89/172 (51.74%), Query Frame = 2
Query:    2 RRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEV--------GNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIXXXXXXXXGKFNPKPIVVVTEKD 493
            +RD++IVM++GL P+G  +L+P G LREPL  LKRAD  V+  A  IS + L++I+  +    ++  ++       YL E+          I+ K PL  +  A V+ V  +G+  +F + L+  G   +  L FNDHH ++  D + I         +     IV+ TEKD
Sbjct:  177 KRDVDIVMIDGLKPFGQGRLIPRGFLREPLSGLKRADFFVISRAHHISREKLQEIKDTLCQYNQNAVVYEATTSSVYLKELSVASLEMKSIIHKKRPLDELKGAKVIAVCGLGNPRSFYRDLEISGAEVIETLSFNDHHQYRPDDFDKI-----INLARQKAIDIVITTEKD 343          
BLAST of DR908451 vs. ExPASy Swiss-Prot
Match: LPXK_ELUMP (Tetraacyldisaccharide 4'-kinase OS=Elusimicrobium minutum (strain Pei191) GN=lpxK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12
Identity = 53/189 (28.04%), Postives = 91/189 (48.15%), Query Frame = 2
Query:    2 RRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIXXXXXXXXGKFNPKPIVVVTEKDYDRDPEILMHLEAYKVLVLCSKLQI 568
            +RD  IV+++   P+G  +LLP G LRE L  LKRA++ ++ H++   ++  +DI+ ++R   + + I      P + F++ N + K+PL  +        SAIG    F  +L+ LG   V    + DH  +   D++             NP   +V T KD+ + PE    +    V VL   ++I
Sbjct:  166 KRDANIVLIDARNPFGGGQLLPYGTLREGLSGLKRANLVLLTHSNQADQRKKEDIKDQIRLQNEDIEILEAVHQPEHYFDICN-SVKVPLNHL-KGEAGVFSAIGEPGGFEDTLKDLGLKLVKVWRYPDHRRYTEEDLKTFVDLAGE-----NP---LVTTFKDFVKFPENWRDILKKNVYVLSVSMKI 344          
BLAST of DR908451 vs. ExPASy Swiss-Prot
Match: LPXK_ANADE (Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lpxK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 52/171 (30.41%), Postives = 83/171 (48.54%), Query Frame = 2
Query:    5 RDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIXXXXXXXXGKFNPKPIVVVTEKDYDR-DPEI 514
            RDL++V+++   P+GN  LLP GP REP  AL+RA +  + HAD  + + L+ +    RD      +  +R  P+ L + G +     L A+    V  +S +     F+++L+ LG        F DHH F A +++ +          +     VV TEKD  R DP +
Sbjct:  168 RDLDVVVLDASNPFGNGHLLPRGPNREPPSALRRAGLVWLSHADRAAPERLEALRALARDATGRAPV-ESRHAPTALLD-GALREAGALEALRGRRVAALSGLARPAGFLRTLEALGAEVALARAFPDHHRFTAGELDAVLREAAASGCAW-----VVTTEKDAVRLDPAL 331          
BLAST of DR908451 vs. ExPASy Swiss-Prot
Match: LPXK_ANASK (Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacter sp. (strain K) GN=lpxK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 49/163 (30.06%), Postives = 78/163 (47.85%), Query Frame = 2
Query:    5 RDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIXXXXXXXXGKFNPKPIVVVTEKD 493
            RDL++V+++   P+GN  LLP GP REP  AL+RA +  + HAD  + + L+ +    RD      +  +R  P+ L + G +     L A+    V  +S +     F+++L+ LG        F DHH F   ++E +          +     VV TEKD
Sbjct:  168 RDLDVVVLDASNPFGNGHLLPRGPNREPRTALRRAGLVWLSHADRAAPERLEALRRLARDATGRAPV-ESRHAPTALLD-GALREAGSLEALRGRRVAALSGLARPAGFLRTLEALGAEVALARAFPDHHRFTGGELEAVLRDADAAGCAW-----VVTTEKD 323          
BLAST of DR908451 vs. ExPASy Swiss-Prot
Match: LPXK_ANAD2 (Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=lpxK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 2
Query:    5 RDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIXXXXXXXXGKFNPKPIVVVTEKDYDR-DPEI 514
            RDL++V+++   P+GN  LLP GP REP  AL+RA +  + HAD  + + L+ +    RD      +  +R   + L + G +     L A+    V  +S +     F+++L+ LG        F DHH F A ++E +        G       VV TEKD  R DP +
Sbjct:  168 RDLDVVVLDASNPFGNGHLLPRGPNREPRTALRRAGLVWLSHADRAAPERLEALRALARDATGRAPV-ESRHAATALLD-GALREAGSLEALRGRRVAALSGLARPAGFLRTLEALGAEVALARAFPDHHRFTAGELEAV-----LRDGDAAGCAWVVTTEKDAVRLDPAL 331          
The following BLAST results are available for this feature:
BLAST of DR908451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LPXK_HALOH5.970e-1832.56Tetraacyldisaccharide 4'-kinase OS=Halothermothrix... [more]
LPXK_ELUMP8.349e-1228.04Tetraacyldisaccharide 4'-kinase OS=Elusimicrobium ... [more]
LPXK_ANADE1.424e-1130.41Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacte... [more]
LPXK_ANASK3.173e-1130.06Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacte... [more]
LPXK_ANAD24.144e-1130.99Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacte... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16579 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-46_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908451 ID=DR908451; Name=DR908451; organism=Citrus sinensis; type=EST; length=639bp
GAGGCGTGATCTTGAAATTGTAATGGTAAATGGGTTAATGCCATGGGGAA
ACAGGAAATTACTACCACTTGGCCCTTTAAGGGAACCTTTGATGGCACTG
AAGCGAGCTGATATTGCTGTGGTCCACCATGCAGACTTGATATCAGAACA
AAATCTTAAAGACATTGAGTTAGAGATGCGAGATATTAAGAAATCTCTTT
CTATTTTCTTCACTAGAATGGTTCCCTCATACTTATTTGAAGTGGGAAAT
ATCAACTCTAAGATACCATTGACAGCAGTTTGTAATGCTAATGTATTATG
TGTTTCTGCTATTGGTTCTGCAAATGCTTTTGTGCAGTCGCTGCAGAAGT
TAGGACCATGTTCTGTTAATCGACTGGACTTTAATGACCATCACTCGTTT
CAAGCCAGGGATATCGAGATGATAAAAAAGAAGCTTGAAGAACTAGAGGG
CAAGTTTAATCCTAAGCCAATTGTTGTTGTAACAGAAAAGGATTATGATC
GGGACCCAGAGATTCTGATGCATTTGGAGGCATATAAAGTTCTTGTACTC
TGTTCTAAATTACAGATCATACCTTGCAGAGGATGCACTGAGGATAGCTT
CAAGTTGCTTTTAAAGGAACTAGTGGATGTAAAATGATC
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