DR908449

Overview
NameDR908449
Unique NameDR908449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7505 contig Csv1_Contig7505:469..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 9.377e-72
Identity = 131/149 (87.92%), Postives = 141/149 (94.63%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPISKA-VITE 445
            GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L+ K +S   VITE
Sbjct:  131 GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITE 279
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 9.377e-72
Identity = 131/149 (87.92%), Postives = 141/149 (94.63%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPISKA-VITE 445
            GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L+ K +S   VITE
Sbjct:  131 GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITE 279
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 6.078e-71
Identity = 127/142 (89.44%), Postives = 136/142 (95.77%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPIS 427
            GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L  K +S
Sbjct:  132 GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKALS 273
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.354e-70
Identity = 129/149 (86.58%), Postives = 139/149 (93.29%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKP---ISKAVI 439
            GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF KSPYQE+TD L   P   IS+ V+
Sbjct:  123 GLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVKISEVVV 271
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.404e-59
Identity = 110/154 (71.43%), Postives = 123/154 (79.87%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPISKAVITEVDQVEP 463
            GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KAT+  +  TY +LTPD WRET F KSPYQEYTD L       AV     + +P
Sbjct:  124 GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYLAKHHGRGAVTAHPTEEKP 277
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.396e-59
Identity = 106/136 (77.94%), Postives = 120/136 (88.24%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 409
            GLGVKCSKEVATAIRGAIILAKLS+IPVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  123 GLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.129e-59
Identity = 105/136 (77.21%), Postives = 120/136 (88.24%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 409
            GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  138 GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.129e-59
Identity = 105/136 (77.21%), Postives = 120/136 (88.24%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 409
            GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  138 GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.129e-59
Identity = 105/136 (77.21%), Postives = 120/136 (88.24%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 409
            GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  138 GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.129e-59
Identity = 105/136 (77.21%), Postives = 120/136 (88.24%), Query Frame = 2 
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 409
            GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  138 GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
The following BLAST results are available for this feature:
BLAST of DR908449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS22_ARATH9.377e-7287.9240S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH9.377e-7287.9240S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS23_ARATH6.078e-7189.4440S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS24_ARATH1.354e-7086.5840S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS2_URECA1.404e-5971.4340S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_ICTPU2.396e-5977.9440S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_RAT3.129e-5977.2140S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE3.129e-5977.2140S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN3.129e-5977.2140S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]
RS2_BOVIN3.129e-5977.2140S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16577 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908449 ID=DR908449; Name=DR908449; organism=Citrus sinensis; type=EST; length=639bp
GGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCG
CTATCATATTGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGG
GGTAACAAGATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAA
GTGTGGCAGTGTCACCGTGAGGATGGTTCCGGCCCCACGTGGTGCCGGAA
TTGTGGCGGCTAGGGTTCCAAAGAAGGTGCTGCAGTTTGCTGGTATTGAC
GATGTTTTCACATCTTCTCGTGGGTCGACCAAGACTCTTGGAAACTTTGT
CAAGGCAACCTTTGAGTGTTTGTTGAAGACATATGGCTTCCTTACACCTG
ATTTCTGGAGGGAGACTCGTTTTGTGAAATCTCCATACCAAGAGTACACA
GATCTTTTGACGCCAAAGCCCATCAGCAAGGCAGTCATCACAGAAGTTGA
TCAAGTTGAACCTTAAGCTACTTAAGGCTGCATGGAGAGGAGAGCATTAG
AATGAAAGGCATTTTGGTTGACTTTATAGTATAGCTTTGTTTGTTACAGA
CTTTTCTGTTTTTCATTTCTGCAGGACTAGTATGTTGCTATTTGGAGACA
CAATTGTTTGCTTTAAAGTTTTGCAATCAGAGTTTTCTT
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