DR908448

Overview
NameDR908448
Unique NameDR908448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6354 contig Csv1_Contig6354:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908448 vs. ExPASy Swiss-Prot
Match: EI2BG_DICDI (Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.413e-20
Identity = 62/204 (30.39%), Postives = 105/204 (51.47%), Query Frame = 1
Query:   25 DQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQ 624
            DQK+K   F  +K+ ++PYL+  Q+ +       P    +  N N  +S  +  +++T  F +   L    +A   +T KC  ++     YC+ +N+I+ +  INRD+  G+  +L     S +N  I P+A + + T VGP C++G  + +G KCSVK S+IG+HC+IG               I D C I  S+IC++  ++
Sbjct:  235 DQKEKYPLFFDIKKHLIPYLLSCQIPNIKRKRALPA---SAFNQNQTLSQTM--SSTTSPFDQFSEL----NAQKNKTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFFIDPTANV-TITQVGPQCVIGTSTTLGAKCSVKFSIIGKHCKIGDGVRIENSIIMDHVIIEDRCVINSSIICNDVYIK 428          
BLAST of DR908448 vs. ExPASy Swiss-Prot
Match: EI2BG_MACFA (Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.643e-16
Identity = 63/215 (29.30%), Postives = 101/215 (46.98%), Query Frame = 1
Query:   16 EVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL-----GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQE 627
            + L +     S++ +++PYLVR Q  S      + QGQ+ KE    K        Y  L  A+T +     A      G       R   +C V+I      C R++++  +M+ NR V    + L       +  ++H SA++ SK  VG   ++G  +Q+G+K S+KRSVIG  C I               T+ +G +IQGSVIC+NA +++
Sbjct:  213 DFLMENGSITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFLKEANTLNLAPYDACWNACRGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSALC-----PEEPLVHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEK 417          
BLAST of DR908448 vs. ExPASy Swiss-Prot
Match: EI2BG_HUMAN (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.801e-15
Identity = 62/220 (28.18%), Postives = 102/220 (46.36%), Query Frame = 1
Query:    1 RSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL-----GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQE 627
            +  + + L +     S++ +++PYLVR Q  S      + QGQ+ KE    K        Y  +  A+T +     A      G       R   +C V+I      C R++++  +M+ NR V    + L       +   +H SA++ SK  VG   ++G  +Q+G+K S+KRSVIG  C I               T+ +G +IQGSVIC+NA +++
Sbjct:  208 KKYIVDFLMENGSITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSALC-----PEEPPVHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEK 417          
BLAST of DR908448 vs. ExPASy Swiss-Prot
Match: EI2BG_RAT (Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.239e-15
Identity = 60/214 (28.04%), Postives = 98/214 (45.79%), Query Frame = 1
Query:   16 EVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA-----------PVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQ 624
            + L +     S++ +++PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +              R   +C V+I      C R++++  +M+ NR V    + L       + ++IHPSA++ +K  +G   ++G  +Q+G+K S+KRSVIG  C I               T+ +G SI GSVIC+NA ++
Sbjct:  213 DFLMENKSITSIRSELIPYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAFRRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSVLC-----PEESMIHPSAQIANKHLIGADSLIGSDTQVGEKSSIKRSVIGSSCVIRDRVTVTNCLLMNSVTVEEGSSIHGSVICNNAVVE 416          
BLAST of DR908448 vs. ExPASy Swiss-Prot
Match: EI2BG_BOVIN (Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.898e-14
Identity = 58/215 (26.98%), Postives = 101/215 (46.98%), Query Frame = 1
Query:   16 EVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRIL--------ANASTPSFHELY---ALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQE 627
            + L +     S++ +++PYLVR Q  S      + QGQ+ KE    K   + L        AN  T + ++       G +     R   +C V+I      C R++++  +M+ NR V      +       + ++IH SA++ SK  VG   ++G  +Q+G+K S+K SVIG  C I               T+ +G +IQ S+IC++A +++
Sbjct:  214 DFLMENKSITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLTLAPYDTCWNACRGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVSKLLPVIC-----PEESLIHSSAQIVSKHMVGADSLIGPDTQVGEKSSIKHSVIGSSCVIRDRVTVTNCLLMNSVTVEEGSNIQSSIICNDAVIEK 418          
The following BLAST results are available for this feature:
BLAST of DR908448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
EI2BG_DICDI8.413e-2030.39Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_MACFA5.643e-1629.30Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_HUMAN2.801e-1528.18Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_RAT6.239e-1528.04Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_BOVIN6.898e-1426.98Translation initiation factor eIF-2B subunit gamma... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16576 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908448 ID=DR908448; Name=DR908448; organism=Citrus sinensis; type=EST; length=639bp
AGATCTGTTCTGCAAGAGGTTCTAGATCAGAAGGATAAATTTCAAAGCTT
AAAACAGGATGTTCTACCTTATCTTGTTCGGAGCCAGCTGAAATCAGAGA
TATTGATAAATGGTGCACCACAAGGACAGCAAGCAAAAGAAAATGGAAAT
GACAAAGTTAGCTACCGAATCCTTGCTAATGCATCTACTCCAAGCTTTCA
TGAACTCTATGCATTGGGTCCTAATGGCTCTGCTCCTGTCCGAAGAACCC
ATAAATGCTGTGTTTACATTGCCAGCAACAGCAAGTACTGTGTGCGGTTA
AATTCCATTCAAGCATTTATGGACATCAATCGGGATGTCATAGGTGAGGC
AAACCATCTGTCAGGTTATAACTTCTCTGCTCAGAATAACATTATTCATC
CTTCGGCAGAGCTTGGATCTAAAACTACTGTGGGACCACATTGTATGCTG
GGGGAGGGTTCACAAATGGGTGACAAATGTAGTGTAAAACGATCTGTAAT
TGGCCGCCACTGCCGGATAGGTTCAAATGTAAAGGTTGTTAATTCAGTTG
TGATGAATCATGTTACCATTGGAGATGGTTGTTCAATCCAAGGTTCTGTG
ATTTGCAGCAATGCACAGCTCCAAGAGCGTGTTGCACTG
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