DR908442

Overview
NameDR908442
Unique NameDR908442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 292.352 bits (747), Expect = 1.364e-78
Identity = 145/208 (69.71%), Postives = 169/208 (81.25%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSK-SKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ WK+LD KYHFSCQF AD  AMN TDFII STFQEIAGSK+  GQYESHTAFTLPGL RVV GIDV DPKFNI +PGAD S+YFPYTE++RRLTKFH EIEELLY+  +N EH+  L D+KKPI+F+MARLD VKNL+GL E YGKN RLR L NLV+VG   D  K SKD EE AE+KKM+ L+E+Y+L GQ RWI++Q DR++
Sbjct:  448 SDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGG--DRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVR 653          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUS2_ARATH (Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g49190 PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 1.782e-78
Identity = 137/207 (66.18%), Postives = 167/207 (80.68%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ W+  + KYHFS QF AD IAMN  DFII ST+QEIAGSK+  GQYESHTAFT+PGL RVV GIDV DPKFNI +PGAD ++YFPY++K+RRLT  H  IEELL++ E N+EH+G L+D+ KPIIFSMARLD VKNLTGL ECY KN +LR L NLVIVG + D ++S+DREE AEI+KMH+L+E+Y L G+ RWIAAQ +R +
Sbjct:  443 SDIYWRNHEDKYHFSSQFTADLIAMNNADFIITSTYQEIAGSKNNVGQYESHTAFTMPGLYRVVHGIDVFDPKFNIVSPGADMTIYFPYSDKERRLTALHESIEELLFSAEQNDEHVGLLSDQSKPIIFSMARLDRVKNLTGLVECYAKNSKLRELANLVIVGGYIDENQSRDREEMAEIQKMHSLIEQYDLHGEFRWIAAQMNRAR 649          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.361e-77
Identity = 142/207 (68.60%), Postives = 166/207 (80.19%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ WK+ + KYHFSCQF AD  AMN TDFII STFQEIAGSKD+ GQYESHTAFTLPGL RVV GIDV DPKFNI +PGADQ++YFPYTE  RRLT F+PEIEELLY+  +N EHI  L DR KPIIF+MARLD VKN+TGL E YGKN +LR LVNLV+V A     +SKD EE AE+KKM+ L+E Y+L GQ RWI++Q +R++
Sbjct:  446 SDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDKVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPYTETSRRLTSFYPEIEELLYSSVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVV-AGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISSQMNRVR 651          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 4.389e-77
Identity = 142/207 (68.60%), Postives = 166/207 (80.19%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ WK+L+ +YHFSCQF AD  AMN TDFII STFQEIAGSKD  GQYESHTAFTLPGL RVV GIDV DPKFNI +PGADQ++YFP+TE  RRLT FHPEIEELLY+  +N EHI  L DR KPIIF+MARLD VKN+TGL E YGKN +LR LVNLV+V A     +SKD EE AE+KKM+ L+E Y+L GQ RWI++Q +R++
Sbjct:  446 SDIYWKKLEERYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPHTETSRRLTSFHPEIEELLYSSVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVV-AGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVR 651          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.277e-76
Identity = 142/207 (68.60%), Postives = 165/207 (79.71%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ WK+ + KYHFSCQF AD  AMN TDFII STFQEIAGSKD  GQYESHTAFTLPGL RVV GIDV DPKFNI +PGADQ++YFPYTE  RRLT F+PEIEELLY+  +N EHI  L DR KPIIF+MARLD VKN+TGL E YGKN +LR LVNLV+V A     +SKD EE AE+KKM+ L+E Y+L GQ RWI++Q +R++
Sbjct:  446 SDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPYTETSRRLTSFYPEIEELLYSTVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVV-AGDRRKESKDLEEKAEMKKMYELIETYKLNGQFRWISSQMNRVR 651          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.845e-76
Identity = 141/207 (68.12%), Postives = 166/207 (80.19%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ WK+L+ +YHFSCQF AD  AMN TDFII STFQEIAGSKD  GQYESHTAFTLPGL RVV GIDV DPKFNI +PGADQ++YFP+TE  RRLT FH EIEELLY+  +N EHI  L DR KPIIF+MARLD VKN+TGL E YGKN +LR LVNLV+V A     +SKD EE AE+KKM++L+E Y+L GQ RWI++Q +R++
Sbjct:  446 SDIYWKKLEERYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPHTETSRRLTSFHTEIEELLYSSVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVV-AGDRRKESKDLEEKAEMKKMYSLIETYKLNGQFRWISSQMNRVR 651          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 8.278e-76
Identity = 134/207 (64.73%), Postives = 161/207 (77.78%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ WK+ + KYHFSCQF AD IAMN  DFII ST+QEIAG+K+  GQYESHTAFTLPGL RVV GIDV DPKFNI +PGAD ++YFPY++K++RLT  H  IE+LLY  E  +E+IG L DR KPIIFSMARLD VKN+TGL E Y KN +LR LVNLV+V  + D  KS DREE  EI+KMH LM++Y L G+ RWI AQ++R +
Sbjct:  449 SDIYWKKFEDKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTIGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMTIYFPYSDKEKRLTALHSSIEKLLYGTEQTDEYIGSLTDRSKPIIFSMARLDRVKNITGLVESYAKNSKLRELVNLVVVAGYIDVKKSSDREEIEEIEKMHDLMKQYNLNGEFRWITAQTNRAR 655          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.108e-75
Identity = 139/207 (67.15%), Postives = 164/207 (79.23%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ WK++D KYHFS QF AD IAMN TDFII STFQEIAGSKD  GQYESHTAFTLPGL RVV  +  +DPKFNI +PGAD S+YFPYTEK++RLT FHPEIEELLY+  +N EH+  L DR KPIIF+MARLD VKN+TGL E YGKN RLR LVNLV+V    +  +SKD EE AE+ KMH L+E Y+L GQ RWI++Q +R++
Sbjct:  444 SDIYWKKMDEKYHFSSQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHEL-CIDPKFNIVSPGADMSIYFPYTEKEKRLTSFHPEIEELLYSPVENEEHLCVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNTRLRELVNLVVVAGNLE-KESKDNEEKAEMTKMHGLIETYKLNGQFRWISSQMNRVR 648          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.108e-75
Identity = 141/207 (68.12%), Postives = 165/207 (79.71%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+   + D +YHFSCQF AD IAMN TDFII STFQEIAGSKD  GQYESH AFTLPGL RVV GIDV DPKFNI +PGAD SVY+PYTE  +RLT FHPEIEEL+Y+  +N+EH   L D+KKPIIFSMARLD VKN+TGL E YGKN RLR L NLVIV A     +SKDREE AE KKM++L+++Y+LKG +RWI+AQ +R++
Sbjct:  443 SDIYLDKFDSQYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHIAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSVYYPYTETDKRLTAFHPEIEELIYSDVENSEHKFVLKDKKKPIIFSMARLDRVKNMTGLVEMYGKNARLRELANLVIV-AGDHGKESKDREEQAEFKKMYSLIDEYKLKGHIRWISAQMNRVR 648          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 1.561e-74
Identity = 140/207 (67.63%), Postives = 164/207 (79.23%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+   + D +YHFSCQF AD IAMN TDFII STFQEIAGSKD  GQYESH AFTLPGL RVV GIDV DPKFNI +PGAD SVYFPYTE  +RLT FHPEIEELLY++ +N+EH   L D+ KPIIFSMARLD VKN+TGL E YGKN  LR+L NLVIV      ++SKDREE AE KKM+ L+++Y+LKG +RWI+AQ +R++
Sbjct:  443 SDIYLDKFDSQYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHIAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSVYFPYTEADKRLTAFHPEIEELLYSEVENDEHKFVLKDKNKPIIFSMARLDRVKNMTGLVEMYGKNAHLRDLANLVIVCGDHG-NQSKDREEQAEFKKMYGLIDQYKLKGHIRWISAQMNRVR 648          
The following BLAST results are available for this feature:
BLAST of DR908442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS1_ARATH1.364e-7869.71Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUS2_ARATH1.782e-7866.18Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g... [more]
SUSY_MEDSA3.361e-7768.60Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUSY_SOYBN4.389e-7768.60Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUSY_VICFA1.277e-7668.60Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUSY_PHAAU2.845e-7668.12Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUS2_PEA8.278e-7664.73Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]
SUSY_ALNGL4.108e-7567.15Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUS1_MAIZE4.108e-7568.12Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUS2_ORYSJ1.561e-7467.63Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16570 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-09_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908442 ID=DR908442; Name=DR908442; organism=Citrus sinensis; type=EST; length=639bp
TCAGATGTGAAATGGAAGGAACTGGACCCAAAATACCACTTCTCTTGCCA
ATTCATAGCCGATACAATTGCAATGAATGCAACAGATTTCATCATAGCAA
GCACATTCCAGGAGATTGCTGGAAGCAAAGACAGACCCGGACAGTATGAG
AGCCATACCGCATTTACTCTCCCAGGGCTATGTAGAGTTGTCAAAGGCAT
CGATGTCTTGGACCCGAAATTCAACATTGCTGCTCCTGGGGCTGATCAAT
CAGTCTATTTCCCTTACACAGAGAAACAGAGACGACTCACAAAATTTCAT
CCCGAGATTGAGGAATTGCTGTACAATAAAGAAGACAATAATGAACACAT
TGGATATCTTGCAGACAGAAAGAAACCAATTATCTTCTCGATGGCAAGGC
TTGATGTTGTAAAGAACCTCACAGGACTAACCGAGTGTTATGGAAAGAAC
AAGAGGCTGAGAAACTTGGTAAATCTTGTTATAGTTGGGGCCTTCTTTGA
TCCTTCCAAATCAAAAGATAGAGAAGAAACTGCTGAAATAAAAAAGATGC
ACGCATTGATGGAAAAATACCAACTTAAGGGACAAATGAGATGGATAGCA
GCACAGAGTGACAGGCTCAAAACGGAGAGCTCTACCGCT
back to top