DR908440

Overview
NameDR908440
Unique NameDR908440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908440_ssr619 microsatellite DR908440_ssr619:619..630. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DR908440 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTY (UPF0047 protein yjbQ OS=Salmonella typhimurium GN=yjbQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.463e-28
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   76 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 426
            W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR D E    K VP+  +A ++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQ
Sbjct:    2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115          

HSP 2 Score: 30.8018 bits (68), Expect = 4.463e-28
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  479 GIWLCEHRDAPTPRKVVITLNG 544
            GIWL EHR    PRK++ TL G
Sbjct:  116 GIWLGEHRIHGGPRKIIATLQG 137          
BLAST of DR908440 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTI (UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.463e-28
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   76 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 426
            W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR D E    K VP+  +A ++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQ
Sbjct:    2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115          

HSP 2 Score: 30.8018 bits (68), Expect = 4.463e-28
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  479 GIWLCEHRDAPTPRKVVITLNG 544
            GIWL EHR    PRK++ TL G
Sbjct:  116 GIWLGEHRIHGGPRKIIATLQG 137          
BLAST of DR908440 vs. ExPASy Swiss-Prot
Match: YE72_SCHPO (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe GN=SPAC4A8.02c PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.442e-27
Identity = 59/117 (50.43%), Postives = 86/117 (73.50%), Query Frame = 1
Query:   82 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQEL 432
            Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D    L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ++
Sbjct:    5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRADMNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDI 118          
BLAST of DR908440 vs. ExPASy Swiss-Prot
Match: YJBQ_ECOLI (UPF0047 protein yjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.829e-27
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   76 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 426
            W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR D E F  + VP+  +  ++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQ
Sbjct:    2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGN--YEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115          

HSP 2 Score: 26.5646 bits (57), Expect = 2.829e-27
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  479 GIWLCEHRDAPTPRKVVITLNG 544
            GIWL EHR     R+++ TL G
Sbjct:  116 GIWLGEHRIHGGSRRIIATLQG 137          
BLAST of DR908440 vs. ExPASy Swiss-Prot
Match: YJBQ_ECO57 (UPF0047 protein yjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.829e-27
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   76 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 426
            W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR D E F  + VP+  +  ++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQ
Sbjct:    2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGN--YEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115          

HSP 2 Score: 26.5646 bits (57), Expect = 2.829e-27
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  479 GIWLCEHRDAPTPRKVVITLNG 544
            GIWL EHR     R+++ TL G
Sbjct:  116 GIWLGEHRIHGGSRRIIATLQG 137          
BLAST of DR908440 vs. ExPASy Swiss-Prot
Match: Y1880_SYNY3 (UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803) GN=sll1880 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.658e-15
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   73 RWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE-GRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 426
            R  Q+ + +    +  H    KI   +    S  K GL  +F+ HTSASL I EN D DV  D   F  ++VPE GR   ++H+ EG DDMPAHI+S++   +  IPI +G+L +GTWQ
Sbjct:    9 RQHQEILVIATQGKSLHNFNSKIQAVVQH--SGVKTGLCTVFVRHTSASLIIQENADPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLGTWQ 123          
BLAST of DR908440 vs. ExPASy Swiss-Prot
Match: Y1081_METJA (UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii GN=MJ1081 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  127 ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 426
            ITP I+  I++  S+ K G+A +++ HT+A +TINEN D  V+ D   FL+ ++P+     W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQ
Sbjct:   23 ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPKN----WNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQ 115          
The following BLAST results are available for this feature:
BLAST of DR908440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YJBQ_SALTY4.463e-2850.43UPF0047 protein yjbQ OS=Salmonella typhimurium GN=... [more]
YJBQ_SALTI4.463e-2850.43UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ P... [more]
YE72_SCHPO2.442e-2750.43UPF0047 protein C4A8.02c OS=Schizosaccharomyces po... [more]
YJBQ_ECOLI2.829e-2749.57UPF0047 protein yjbQ OS=Escherichia coli (strain K... [more]
YJBQ_ECO572.829e-2749.57UPF0047 protein yjbQ OS=Escherichia coli O157:H7 G... [more]
Y1880_SYNY33.658e-1541.18UPF0047 protein sll1880 OS=Synechocystis sp. (stra... [more]
Y1081_METJA1.815e-1445.54UPF0047 protein MJ1081 OS=Methanocaldococcus janna... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16568 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908440 ID=DR908440; Name=DR908440; organism=Citrus sinensis; type=EST; length=640bp
CCGGGCTCGGGCACCCTAAAAAATTCCAATTCCAATACCAATCCCAATCC
CAATCCCATGGCTTCTAATCCTAGGTGGGCACAGAAGACTGTAACTCTCC
CTCCACTTCGCCGTGGCTGTCATCTCATTACCCCTAAGATAGTGAAGGAA
ATCGCGCAAGACTTGTCAGAATTCAAGTGTGGCCTTGCGCATCTCTTTTT
GCTGCACACAAGTGCCTCTCTTACTATTAATGAGAATTATGACTCTGATG
TTCGGGATGACACCGAGACTTTCCTCAACAAAATAGTCCCAGAGGGGAGA
TCAGCTCCTTGGAAGCATACCCTCGAAGGCCCAGATGACATGCCAGCACA
TATTAAATCATCAATGTTTGGTTGCACACTCACGATTCCAATCACAGATG
GGCAGCTAAACATGGGAACTTGGCAGGAGCTCCATGGATGTATGTTGCTG
CTCACGTCACTACTCACTAGTGCTGATTGGAATATGGCTGTGCGAGCATC
GCGATGCACCCACTCCTCGCAAAGTCGTCATCACTCTCAATGGAATATGA
TTCAATAGGAGATGAGTGCTTTTGTTCTGTTACTTTTCTCCTTTTGACTG
AAATGGTTAATGGCGTGTAATGAATGAATGTAACATAGCA
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