DR908420

Overview
NameDR908420
Unique NameDR908420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2741 contig Csv1_Contig2741:18..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: PPAN_ARATH (Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 9.898e-69
Identity = 130/168 (77.38%), Postives = 143/168 (85.12%), Query Frame = 2
Query:  140 QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLMLP+TA            DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+YSLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLSTCQR+VLLN
Sbjct:   22 QEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQYSLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLSTCQRLVLLN 189          
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: SSF1_MOUSE (Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.916e-34
Identity = 72/156 (46.15%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  176 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            P SFVF+RG+    +RQL +D+R++M P TA            D + VAGP+GVTHFL+L+KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++TV L+T +R +L+N
Sbjct:   29 PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLILTKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGPQGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLIN 184          
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: SSF1_HUMAN (Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  176 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            P SFVF+RG     +RQL +D+R++M P TA            D + VAGP+GVTHFL+LSKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++ V L+T +R +L++
Sbjct:   29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLID 184          
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: SSF1_PONAB (Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.156e-31
Identity = 70/156 (44.87%), Postives = 99/156 (63.46%), Query Frame = 2
Query:  176 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            P SFVF+RG     +RQL +D+R++M P TA            D + VAGP+GVTHFL+LSKTE+  Y ++   P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++ V L+T +R +L++
Sbjct:   29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNIYFKLMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLID 184          
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: PPAN_DICDI (Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.383e-30
Identity = 65/157 (41.40%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  173 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            I KS V+ RG     +++L  + R++M P+TA            DF+N+A   GV+H +  S T+   Y+ +AR P+GPT TFKI EYS   DVA++++RP   +  +  SPL+VL+GF  G  HL++   M Q++FP+I++ T+KLSTC+R+VL N
Sbjct:   45 ISKSIVYKRGDCNKGIKKLVKEFRQVMEPYTATKLQETSDNTTKDFVNIAAHYGVSHLVGFSSTDIGSYMAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFTRGTPHLEMVQNMVQSLFPSINVYTLKLSTCKRVVLFN 201          
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: YDD3_SCHPO (Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe GN=SPAC1B9.03c PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.176e-27
Identity = 68/170 (40.00%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  152 DHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            D I    IPKS V   G  ++   L  L  DLR +M PHTA            D+L +AGP+GVTH L+LS+T++   LR+ R P+GP+L F+IHEY L  DV + Q  P+ P   F T PL+V++ F         H  L T  FQN+FP I +    +++ +R++LLN
Sbjct:   18 DPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINSVKRVLLLN 187          
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: PPAN_DROME (Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  176 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            P SFV  RG     +  L +D R++M P TA            DF++++    V+H  + +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F    +HLKL    FQN+FP+I++ TV + T +R VL +
Sbjct:   28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFS 183          
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: SSF2_YEAST (Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae GN=SSF2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 65/172 (37.79%), Postives = 94/172 (54.65%), Query Frame = 2
Query:  173 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESA--PYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPR-CPQDLFKTSPLIVLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH  M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+VL+GF T       DQ +   K+   MFQNIFP ++     L++ +RI ++N
Sbjct:   22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMIN 193          
BLAST of DR908420 vs. ExPASy Swiss-Prot
Match: SSF1_YEAST (Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae GN=SSF1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21
Identity = 64/172 (37.21%), Postives = 94/172 (54.65%), Query Frame = 2
Query:  173 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESA--PYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPR-CPQDLFKTSPLIVLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLN 643
            IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH  M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+VL+GF T       DQ +   K+   MFQNIFP ++     L++ +R+ ++N
Sbjct:   22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMIN 193          
The following BLAST results are available for this feature:
BLAST of DR908420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PPAN_ARATH9.898e-6977.38Peter Pan-like protein OS=Arabidopsis thaliana GN=... [more]
SSF1_MOUSE7.916e-3446.15Suppressor of SWI4 1 homolog OS=Mus musculus GN=Pp... [more]
SSF1_HUMAN4.344e-3245.51Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PP... [more]
SSF1_PONAB2.156e-3144.87Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PP... [more]
PPAN_DICDI2.383e-3041.40Peter Pan-like protein OS=Dictyostelium discoideum... [more]
YDD3_SCHPO7.176e-2740.00Brix domain-containing protein C1B9.03c OS=Schizos... [more]
PPAN_DROME1.829e-2234.62Protein Peter pan OS=Drosophila melanogaster GN=pp... [more]
SSF2_YEAST2.641e-2137.79Ribosome biogenesis protein SSF2 OS=Saccharomyces ... [more]
SSF1_YEAST3.450e-2137.21Ribosome biogenesis protein SSF1 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16548 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-28_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908420 ID=DR908420; Name=DR908420; organism=Citrus sinensis; type=EST; length=645bp
AGAACACTCTGCGCAGCAACAACCATTTCAAGAAGTGAAATAATTAATCA
GGAAAGTTTGAAGTTGTGCCTACAAAGCCATGGCTCGTTTCCGGAATAGT
AAGAAGAAGGGATTTGTGAAGTCATTTGTGAAGAAGAAGCAGCCGACTGT
GGATCACATCACCGGTGATAAGATTCCAAAGAGTTTTGTGTTTTCAAGAG
GAAAGTTGCCTGGTCCTCTCAGGCAGCTTGAAATGGATTTAAGAAAGTTG
ATGCTTCCACACACTGCTCTCAACCTTAAGGAGAAGAAACGGAATAATCT
CAAGGACTTTCTGAATGTTGCAGGGCCAATGGGTGTTACACATTTCCTCA
TGTTATCAAAGACTGAATCTGCACCCTACTTGAGGGTTGCAAGGACCCCT
CAGGGCCCAACTCTTACATTTAAAATACACGAGTACTCATTAGCTGTTGA
TGTCGCCCAATCTCAATTGCGTCCTAGATGTCCTCAAGATCTTTTCAAAA
CTTCTCCTTTGATTGTTCTTTCTGGTTTTGGAACTGGAGATCAACATCTA
AAGCTCACAACTATTATGTTTCAGAACATCTTTCCGGCTATTGATATCAA
CACTGTGAAGCTTTCGACTTGCCAGAGGATTGTGTTGCTTAATTA
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