DR908416

Overview
NameDR908416
Unique NameDR908416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6350 contig Csv1_Contig6350:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908416 vs. ExPASy Swiss-Prot
Match: ADPRM_XENLA (Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.729e-20
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVGTGWMQSTDMCFTP*VNFTIYH 399
            G +   Q+ W+ ++L  + K  +KV V  H+P+ P +A    L+WN  EV+ ++  + CV   LAGH+H+G + +D  GIHH      +E PP + AFG +  Y+D++ L G G ++   + +    N  + H
Sbjct:  224 GGISPSQLDWIQSILTSSDKKEEKVFVVSHLPVHPDAADTMCLIWNYPEVLSMLQSHPCVVGYLAGHNHEGRYCMDPSGIHHMTFSGVIETPPESQAFGTMYVYEDKMVLKGRGLVEDRTLHYRDPKNMQVGH 356          
BLAST of DR908416 vs. ExPASy Swiss-Prot
Match: ADPRM_XENTR (Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.949e-20
Identity = 42/123 (34.15%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVGTGWMQSTDMCF 369
            G +   Q+ W++ VL  + +  + V V  H+P+ P +A P  L+WN  EV+ V+  + CV   LAGH+H+G + +D +GIHH      +E PP + AFG +  Y+D++ L G G ++   + +
Sbjct:  210 GGISPSQLDWMERVLTSSDEKEENVFVVSHLPVHPDAADPMCLVWNYPEVLSVLQSHPCVVGYLAGHNHEGRYCMDPYGIHHLTFSGVIETPPESRAFGTMYVYEDKMVLKGRGLVEDRTLYY 332          
BLAST of DR908416 vs. ExPASy Swiss-Prot
Match: ADPRM_BOVIN (Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Bos taurus PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.464e-19
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVGTG 342
            G    EQ+ WL+AVL  + +  +KVV+  H+P+ P ++    L WN  + + VI  + CV    AGH H GG+S D +G+HH  +E  +E  P + AFG +  Y D++ L G G
Sbjct:  212 GGFSPEQLNWLNAVLTFSDRNQEKVVIVSHLPIYPEASDSVCLAWNYRDALAVIWSHKCVVCFFAGHTHDGGYSEDPYGVHHVNIEGVIETAPDSQAFGTVHVYPDKMMLEGRG 325          
BLAST of DR908416 vs. ExPASy Swiss-Prot
Match: ADPRM_RAT (Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Rattus norvegicus PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    1 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVGTG 342
            G   +EQ+ WL+ VL  +    +KVV+  H+P+ P ++    L WN  + + +I  + CV   LAGH H GG+S D  G+HH  LE  +E  P + AFG +  Y D++ L G G
Sbjct:  212 GGFSQEQLNWLNEVLTFSDANQEKVVIVSHLPIYPEASDSVCLAWNYVDALSIIWSHQCVVCFLAGHTHDGGYSEDPFGVHHVNLEGVIETAPDSQAFGTVHVYPDKMLLKGRG 325          
BLAST of DR908416 vs. ExPASy Swiss-Prot
Match: ADPRM_DANRE (Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Danio rerio GN=zgc:64213 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.618e-18
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    1 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVGTGWMQSTDMCFT 372
            G   ++Q++WLDAVL  +    ++V++  H+P+ P +A P  L WN   V+ V+  +  V   +AGHDH GG   D+ G  H  LE  +E PP + AF     Y+DR+ + G G ++   + ++
Sbjct:  199 GGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSSGAQHITLEGVIETPPHSHAFATAYLYEDRMVMKGRGRVEDLTITYS 322          
BLAST of DR908416 vs. ExPASy Swiss-Prot
Match: ADPRM_MOUSE (Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    1 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVGTG 342
            G   +EQ+ WL+ VL  +    +KVV+  H+P+ P ++    L WN  + + +I  + CV   LAGH H GG+S D  G+HH  LE  +E  P + AFG +  + D++ L G G
Sbjct:  212 GGFSQEQLNWLNEVLTFSDTNQEKVVIVSHLPIYPEASDSVCLAWNYVDALSIIWSHKCVVCFLAGHTHDGGYSEDPFGVHHVNLEGVIETAPDSQAFGTVHVFPDKMLLKGRG 325          
BLAST of DR908416 vs. ExPASy Swiss-Prot
Match: ADPRM_HUMAN (Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Homo sapiens GN=C17orf48 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    1 GAVGKEQIKWLDAVLQDATKLNQKVVVCCHVPLDPGSASPEALLWNCNEVMDVIHRYNCVKVCLAGHDHQGGHSIDTHGIHHRVLEAALECPPGTDAFGHIDAYDDRLSLVGTG 342
            G   +EQ+ WL+ VL  +    +KVV+  H+P+ P ++    L WN  + + VI  + CV    AGH H GG+S D  G++H  LE  +E  P + AFG +  Y D++ L G G
Sbjct:  212 GGFSQEQLNWLNEVLTFSDTNQEKVVIVSHLPIYPDASDNVCLAWNYRDALAVIWSHECVVCFFAGHTHDGGYSEDPFGVYHVNLEGVIETAPDSQAFGTVHVYPDKMMLKGRG 325          
The following BLAST results are available for this feature:
BLAST of DR908416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ADPRM_XENLA1.729e-2032.33Manganese-dependent ADP-ribose/CDP-alcohol diphosp... [more]
ADPRM_XENTR2.949e-2034.15Manganese-dependent ADP-ribose/CDP-alcohol diphosp... [more]
ADPRM_BOVIN1.464e-1937.72Manganese-dependent ADP-ribose/CDP-alcohol diphosp... [more]
ADPRM_RAT7.263e-1937.72Manganese-dependent ADP-ribose/CDP-alcohol diphosp... [more]
ADPRM_DANRE1.618e-1833.87Manganese-dependent ADP-ribose/CDP-alcohol diphosp... [more]
ADPRM_MOUSE2.113e-1836.84Manganese-dependent ADP-ribose/CDP-alcohol diphosp... [more]
ADPRM_HUMAN4.708e-1836.84Manganese-dependent ADP-ribose/CDP-alcohol diphosp... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16544 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-44_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908416 ID=DR908416; Name=DR908416; organism=Citrus sinensis; type=EST; length=646bp
GGAGCTGTTGGGAAGGAACAGATAAAATGGCTAGATGCCGTACTTCAGGA
TGCAACAAAGTTAAATCAGAAAGTAGTAGTTTGTTGTCATGTGCCTTTAG
ATCCTGGTTCAGCTTCCCCAGAAGCACTTTTGTGGAATTGCAATGAAGTA
ATGGATGTGATACACCGTTACAATTGTGTGAAAGTTTGTCTGGCTGGCCA
TGATCACCAAGGAGGGCATTCAATTGATACACATGGGATACACCACAGAG
TCCTTGAAGCTGCCCTGGAGTGCCCTCCCGGCACAGATGCATTTGGTCAT
ATTGATGCTTATGACGATAGGTTATCACTTGTTGGTACTGGTTGGATGCA
GAGCACAGATATGTGTTTTACTCCCTAAGTGAATTTTACGATATATCATT
GGCAAGATTCTACAAACTCAATTCTTCAATAAAAAGATGTAGTTTGCACA
TTAATTTCTACCAGAACTATGTTTAGGGAAATGCAGGCTTGACAGAGCTC
AGTAAGGAGGTGGTTTCTCTCCAAGTGTTTGGCAAGGATTCAGTTTTCTG
CTGTCTGGGGTTAAAGATCTGATGACTGGAATTTTTGACATGCTCAATTG
AAGATGAAGCGCAAGGATTTATATGGCTACTCAACATTTGTTTCCA
back to top