DR908411

Overview
NameDR908411
Unique NameDR908411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6349 contig Csv1_Contig6349:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.721e-36
Identity = 70/98 (71.43%), Postives = 77/98 (78.57%), Query Frame = 1
Query:   40 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKNCQKPIVAGTETMMTDAPELIPNNNHLALE 333
            +RKCMHCE+TKTPQWR GPMGPKTLCNACGVRYKSGRLFPEYRPAASPTF P+LHSNSHKKV EMRNK C         T   D   LIPNN ++ ++
Sbjct:  228 LRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKRCSD---GSYITEENDLQGLIPNNAYIGVD 322          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GATA6_ARATH (GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.560e-29
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   40 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKN 246
            VRKC HCE TKTPQWR GP GPKTLCNACGVR++SGRL PEYRPA+SPTF+P++HSNSH+K++EMR K+
Sbjct:  219 VRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRKD 287          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.725e-28
Identity = 60/103 (58.25%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   13 TSEVGPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKNCQKPIVAGTET---MMTDAPELIPN 312
            + E+   Q  RKC HC + KTPQWRAGPMG KTLCNACGVRYKSGRL PEYRPA SPTF   LHSN H+KV+EMR K   K   +  ET    +  +P+ +P+
Sbjct:  239 SGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRK---KEPTSDNETGLNQLVQSPQAVPS 338          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.554e-28
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   40 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKN 246
            VR C HCE   TPQWR GP GPKTLCNACGVR+KSGRL PEYRPA+SPTF+PS+HSNSH+K++EMR K+
Sbjct:  217 VRICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMRKKD 285          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.491e-27
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    7 DETSEVGPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNK 243
            D   + G +   R+C+HC   KTPQWR GPMGPKTLCNACGVRYKSGRL PEYRPA+SPTFV + HSNSH+KV+E+R +
Sbjct:  185 DMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQ 263          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   43 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNK 243
            RKC HC   KTPQWRAGP GPKTLCNACGVRYKSGRL PEYRPA SPTF   LHSNSH+K+VEMR +
Sbjct:  194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQ 260          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GAT13_ARATH (GATA transcription factor 13 OS=Arabidopsis thaliana GN=At5g25830 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   43 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNK 243
            R+C+HC   KTPQWR GPMGPKTLCNACGVRYKSGRL PEYRPAASPTFV + HSNSH+KV+E+R +
Sbjct:  219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQ 285          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    4 SDETSEVGPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNK 243
            S ET+E G    +R+C HC   KTPQWR GP+GPKTLCNACGVR+KSGRL PEYRPA+SPTFV + HSNSH+KV+E+R +
Sbjct:  169 SSETTEGG---GMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQ 245          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   43 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKNCQK 255
            R+C HC   KTPQWR GP+GPKTLCNACGVRYKSGRL PEYRPA+SPTFV + HSNSH+KV+E+R +  Q+
Sbjct:  158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEQQ 228          
BLAST of DR908411 vs. ExPASy Swiss-Prot
Match: GATA9_ARATH (GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.697e-26
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 1
Query:   43 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNK 243
            R+C HC + KTPQWRAGP+G KTLCNACGVRYKSGRL PEYRPA SPTF   LHSN H KV+EMR K
Sbjct:  221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSKVIEMRRK 287          
The following BLAST results are available for this feature:
BLAST of DR908411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GAT10_ARATH1.721e-3671.43GATA transcription factor 10 OS=Arabidopsis thalia... [more]
GATA6_ARATH1.560e-2976.81GATA transcription factor 6 OS=Arabidopsis thalian... [more]
GAT14_ARATH1.725e-2858.25GATA transcription factor 14 OS=Arabidopsis thalia... [more]
GATA5_ARATH6.554e-2875.36GATA transcription factor 5 OS=Arabidopsis thalian... [more]
GAT11_ARATH2.491e-2767.09GATA transcription factor 11 OS=Arabidopsis thalia... [more]
GATA1_ARATH3.253e-2779.10GATA transcription factor 1 OS=Arabidopsis thalian... [more]
GAT13_ARATH3.253e-2777.61GATA transcription factor 13 OS=Arabidopsis thalia... [more]
GATA2_ARATH9.464e-2767.50GATA transcription factor 2 OS=Arabidopsis thalian... [more]
GATA4_ARATH2.754e-2671.83GATA transcription factor 4 OS=Arabidopsis thalian... [more]
GATA9_ARATH4.697e-2676.12GATA transcription factor 9 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16539 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908411 ID=DR908411; Name=DR908411; organism=Citrus sinensis; type=EST; length=647bp
GTTTCCGATGAGACTAGTGAAGTTGGGCCAACACAAGCGGTTAGGAAATG
CATGCATTGCGAGATAACGAAGACGCCTCAATGGAGAGCAGGGCCAATGG
GGCCAAAAACCCTTTGCAATGCATGCGGTGTTCGCTATAAGTCTGGCAGG
CTCTTCCCCGAATACAGGCCTGCTGCTAGCCCGACATTTGTCCCATCCTT
GCACTCCAATTCCCACAAAAAGGTTGTTGAAATGAGAAACAAGAATTGCC
AGAAGCCAATTGTGGCTGGCACTGAAACGATGATGACCGATGCACCAGAG
TTGATTCCAAACAATAATCACCTTGCACTGGAGTACGTTTGAGGGATCAA
GACGGCTCAGAGAGCAGCATTCCCTGACGGGAATATCTCTTTTCCGGTCT
TTGTTATTTGCTTATTGTTATTTCATTTCTTTGTTCATTTGTTTCTTGTA
CAGGGATGGAATGGGGGAATAGGAGCAATAGGTGACCAAATTTTAGCTAA
AGTAGTGAAGGACTGTAATGAGAGAGGACTGAAGAAGGATTAGAGAAAGA
GGAGGAAAGCATAAGGGTAGTAGAGTTTTAGGGTTTAGTGATGAGTAGGT
CCTAAAGTCATTTAGGTATATTTGCCGGTCTGTGTTTCAAATTCCTT
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