DR908408

Overview
NameDR908408
Unique NameDR908408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: RRMJ3_DICDI (rRNA methyltransferase 3 homolog OS=Dictyostelium discoideum GN=fsjC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21
Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  111 KAEILACAKKMLRKKQREQILDDVYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPK--RPKKEYVVAKKGVQVRAGKGE 551
            K +  A  + ++RKK R+ ++DD +N+Y F+D GLP+WF ++E RH +A  P+TKE +  ++ + KEID                     +EK R KA+ I D  ++S+R K K IE+LY     K  +PKK  ++AKK      G G+
Sbjct:  644 KIKTKALGEFLIRKKSRQDLIDDSFNKYAFNDTGLPNWFTDDENRHNKAQTPLTKEMVDEIRRKIKEIDDRPIKKIAEAKARKKYRLGKKMEKTRDKASSIVDNPEMSNREKSKAIEKLYSGTDKKNMKPKKIIMIAKKSKTAGGGTGK 792          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: SPB1_ASPFU (AdoMet-dependent rRNA methyltransferase spb1 OS=Aspergillus fumigatus GN=spb1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 53/151 (35.10%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  114 AEILACAKKMLR-KKQREQILDDVYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGVQVRAGKGEG 554
            AE +A A++M   +K+ + I+DD +NRY F D DGLP+WFL++E +H +  RP+TK   AA+K + + I+                     LEK+RKK+ +++D   +S+R K + I +L   AV K+PK++   VVA+   +  +G+  G
Sbjct:  618 AEAMALAQQMATGEKKSQDIIDDGFNRYTFRDVDGLPEWFLDDENKHSKPQRPITKAAAAAIKEKLRAINARPIKKVMEAKGRKKMKAAQRLEKLRKKSALLADDEALSERDKSQAIAKLMSKAVKKKPKQQVKLVVARGANRGISGRPRG 768          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: SPB1_EMENI (AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans GN=spb1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 50/151 (33.11%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  114 AEILACAKKMLR-KKQREQILDDVYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKK--EYVVAKKGVQVRAGKGEG 554
            AE +A A++M   +K+ + + DD +NRY F D DGLP+WFL++E +H +  RP+TK   AA++ +++ I+                     +EK+RKK+ +++D   +S+R K + I ++   A  K+PK+  + VVAK G +  +G+ +G
Sbjct:  628 AEAMALAQQMATGEKKSQDVFDDGFNRYAFRDVDGLPEWFLDDENKHSKPNRPITKAAAAAIQEKWRAINARPIKKVMEAKGRKKFKAAQRIEKLRKKSALLADDETMSERDKAQAIARMMSRAAKKKPKQNVKLVVAKGGNRGISGRPKG 778          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: SPB1_CANGA (AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata GN=SPB1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 45/141 (31.91%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  144 LRKKQREQILDDVYNRYMF-DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPK---RPKKEYVVAKKGVQVRAGKGEG 554
            L ++ +  ++D+ +NRY F D + LP+WFLEEE++H +  RP+TKE + A+K + K ++                     LEK++KKA +I+D +D S++ K ++I +L +    K   +PK   VVA    +  +G+ +G
Sbjct:  666 LGQRSKHDLVDEGFNRYAFRDTENLPEWFLEEEKQHSKVNRPITKEAVMALKEKMKALNARPIKKVAEARARKKMRAVKRLEKIKKKAGLINDDSDKSEKDKAEEIAKLMRKVTKKQKTKPKVTLVVAHGKNKGLSGRPKG 806          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: RRMJ3_HUMAN (Putative rRNA methyltransferase 3 OS=Homo sapiens GN=FTSJ3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 47/130 (36.15%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  150 KKQREQILDDVYNRYMFDDDG--LPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV 527
            KK +  ++D+ +NRY F++D   LP+WF++EE++HR    PV K+E+   + +++EI+                     LE+ RKKA  + +  DIS+R K  Q+  LYK A   + K+   YVVAKKGV
Sbjct:  678 KKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPVGKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRHVTYVVAKKGV 807          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: SPB1_ASHGO (AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii GN=SPB1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 47/141 (33.33%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  144 LRKKQREQILDDVYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPK---RPKKEYVVAKKGVQVRAGKGEG 554
            L ++ +  I+D+ +NRY F D D LP+WFLE+E+ H +  +P+TKE   A+K + K ++                     LEK++KKA +I+D +D S++ K ++I +L K    K   +PK   VVAK   +  +G+ +G
Sbjct:  658 LGQRSKHDIVDEGFNRYSFRDRDNLPEWFLEDEKMHSKINKPITKEAAMAIKEKLKALNARPIKKVAEAKARKKMRALNRLEKLKKKAGLINDDSDKSEKDKAEEIAKLMKKVTKKAKLKPKVTLVVAKGKNRGLSGRPKG 798          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: RRMJ3_PONAB (Putative rRNA methyltransferase 3 OS=Pongo abelii GN=FTSJ3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  150 KKQREQILDDVYNRYMFDDDG--LPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV 527
            KK +  ++D+ +NRY F++D   LP+WF++EE++HR    P+ K+E+   + +++EI+                     LE+ RKKA  + +  DIS+R K  Q+  LYK A   + K+   YVVAKKGV
Sbjct:  672 KKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPIGKKEMEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRHVTYVVAKKGV 801          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: SPB1_YEAST (AdoMet-dependent rRNA methyltransferase SPB1 OS=Saccharomyces cerevisiae GN=SPB1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  144 LRKKQREQILDDVYNRYMF-DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPK---RPKKEYVVAKKGVQVRAGKGEG 554
            L +K +  ++D+ +NRY F D + LPDWFLE+E+ H +  +P+TKE   A+K + K ++                     LEK++KKA +I+D +D +++ K ++I +L +    K   +PK   VVA    +  AG+ +G
Sbjct:  671 LGQKNKHDLVDEGFNRYTFRDTENLPDWFLEDEKEHSKINKPITKEAAMAIKEKIKAMNARPIKKVAEAKARKRMRAVARLEKIKKKAGLINDDSDKTEKDKAEEISRLMRKVTKKPKTKPKVTLVVASGRNKGLAGRPKG 811          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: RRMJ3_RAT (Putative rRNA methyltransferase 3 OS=Rattus norvegicus GN=Ftsj3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 44/130 (33.85%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  150 KKQREQILDDVYNRYMF--DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV 527
            KK +  ++D+ +NRY F  +++ LP+WF++EE++HR    P+ K+E+   + +++EI+                     LE+ +KKA  + +  DIS+R K  Q+  LYK A   + K++  YVVAKKGV
Sbjct:  661 KKAKRDLIDNSFNRYAFNEEEEELPEWFVQEEKQHRIRQLPLDKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKKLEQTKKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRQVTYVVAKKGV 790          
BLAST of DR908408 vs. ExPASy Swiss-Prot
Match: RRMJ3_MOUSE (Putative rRNA methyltransferase 3 OS=Mus musculus GN=Ftsj3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  150 KKQREQILDDVYNRYMFDDDG--LPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXXLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV 527
            KK +  ++D+ +NRY F+++   LP+WF +EE++HR    PV K+E+   + +++EI+                     LE+ +KKA  + +  DIS+R K  Q+  LYK A   + K++  YVVAKKGV
Sbjct:  669 KKAKRDLIDNSFNRYAFNEEEGELPEWFAQEEKQHRIRQLPVDKKEVEHYRKRWREINARPIKKVAEAKARKKRRVLKKLEQTKKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRQVTYVVAKKGV 798          
The following BLAST results are available for this feature:
BLAST of DR908408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RRMJ3_DICDI2.667e-2135.57rRNA methyltransferase 3 homolog OS=Dictyostelium ... [more]
SPB1_ASPFU4.708e-1835.10AdoMet-dependent rRNA methyltransferase spb1 OS=As... [more]
SPB1_EMENI2.337e-1733.11AdoMet-dependent rRNA methyltransferase spb1 OS=Em... [more]
SPB1_CANGA4.406e-1631.91AdoMet-dependent rRNA methyltransferase SPB1 OS=Ca... [more]
RRMJ3_HUMAN4.406e-1636.15Putative rRNA methyltransferase 3 OS=Homo sapiens ... [more]
SPB1_ASHGO7.516e-1633.33AdoMet-dependent rRNA methyltransferase SPB1 OS=As... [more]
RRMJ3_PONAB9.817e-1635.38Putative rRNA methyltransferase 3 OS=Pongo abelii ... [more]
SPB1_YEAST1.674e-1531.91AdoMet-dependent rRNA methyltransferase SPB1 OS=Sa... [more]
RRMJ3_RAT2.187e-1533.85Putative rRNA methyltransferase 3 OS=Rattus norveg... [more]
RRMJ3_MOUSE2.187e-1534.62Putative rRNA methyltransferase 3 OS=Mus musculus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16536 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908408 ID=DR908408; Name=DR908408; organism=Citrus sinensis; type=EST; length=647bp
ACAACCAAGTGTCAGAGGTGGAAGGTGATTTTGAGATAGTCCCTGCTCCA
GGCGCGGATTCCAGTGACGACTCATCCTCTGATGAATCAGAAGATGAAGA
GGTTGATACAAAAGCTGAGATATTGGCTTGTGCAAAGAAGATGCTAAGGA
AAAAGCAAAGGGAGCAGATTCTGGATGATGTTTACAATAGGTACATGTTT
GATGATGATGGCTTGCCAGACTGGTTTTTAGAAGAGGAAAGGAGGCATCG
GCAAGCAATTAGGCCTGTTACCAAGGAGGAGATTGCTGCAATGAAAGCAC
AATTCAAAGAAATTGATGCCCGACCTGCTAAGAAGGTGGCTGAGGCCAAA
GCCCGAAAGAAGCGGGTTGCCATGCGAAAGCTTGAGAAGGTTCGCAAGAA
GGCGAATGTCATATCAGACCAAGCAGACATCTCTGATCGCTCAAAGAGGA
AGCAAATTGAACAATTATACAAGTCAGCTGTACCCAAAAGGCCTAAAAAG
GAATATGTGGTTGCGAAGAAGGGAGTTCAAGTGAGGGCTGGAAAGGGGGA
AGGTTCTTGTTGATCCACGAATGAAAAAGGATTCAAGGACACATGGATCT
GGCAAGGCCAGAAAAGGTGGTTCGAAGAAGGGGAATATTGGCAAGGC
back to top