DR908405

Overview
NameDR908405
Unique NameDR908405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:9..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.090e-85
Identity = 156/181 (86.19%), Postives = 169/181 (93.37%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTILSSETM+IPDGV +K+NAKVIEVEGPRGKL RDFKHLNLDF L+TDE  GK+KLKIDAWFGSRKTSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N+NK+IEIRNFLGEKKVRKVD+LDGV++IRS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIR FL G
Sbjct:    1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDEN-GKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDG 180

HSP 2 Score: 28.8758 bits (63), Expect = 2.090e-85
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTILGEE 634
            +FLDGIYVSEK  ++ EE
Sbjct:  176 KFLDGIYVSEKGAVVVEE 193
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 3.889e-84
Identity = 148/181 (81.77%), Postives = 167/181 (92.27%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTILSSETMDIPDGV +K+NAKVIEVEGPRGKL+RDFKHLNLDF L+ D+ TGKR+LKID+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI  NNK+IEIRNFLGEKKVRKV+MLDGV ++RS+KVKDE++L+GNDIELVSRS ALINQKCHVK KDIR FL G
Sbjct:    1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDG 181

HSP 2 Score: 28.1054 bits (61), Expect = 3.889e-84
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTILGEE 634
            +FLDGIYVSEK  I  EE
Sbjct:  177 KFLDGIYVSEKGKIAVEE 194
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 309.301 bits (791), Expect = 1.100e-83
Identity = 152/193 (78.76%), Postives = 173/193 (89.64%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMGSMSVRKAPYLEK 632
            MKTILSSETMDIPD V +K++AKVIEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKID+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG + K+IEIRNFLGEKKVRKV+MLDGVT++RS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIR FL G     K+  +E+
Sbjct:    1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEE 193
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 292.352 bits (747), Expect = 5.552e-80
Identity = 146/181 (80.66%), Postives = 165/181 (91.16%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTIL+SETM+IP+GV V++ AKV+ VEGPRGKL+R+FKHLNLDF L+     G RKL++DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N AIEIRNFLGEKKVRKVDML+GVT++RS+KVKDELVLDGNDIELVSRSAALINQKCHVKNKDIR FL G
Sbjct:    1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDG 177

HSP 2 Score: 26.9498 bits (58), Expect = 5.552e-80
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVS+K TI
Sbjct:  173 KFLDGIYVSDKGTI 186
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 4.029e-53
Identity = 101/181 (55.80%), Postives = 130/181 (71.82%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTILS++T+DIP+ V++ +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIR FL G
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDG 178

HSP 2 Score: 27.7202 bits (60), Expect = 4.029e-53
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVSEK T+
Sbjct:  174 KFLDGIYVSEKGTV 187
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.252e-53
Identity = 102/181 (56.35%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A IRT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIR FL G
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDG 178

HSP 2 Score: 27.7202 bits (60), Expect = 5.252e-53
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVSEK T+
Sbjct:  174 KFLDGIYVSEKGTV 187
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.252e-53
Identity = 101/181 (55.80%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIR FL G
Sbjct:    1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDG 178

HSP 2 Score: 27.7202 bits (60), Expect = 5.252e-53
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVSEK T+
Sbjct:  174 KFLDGIYVSEKGTV 187
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.847e-53
Identity = 101/181 (55.80%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIR FL G
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDG 178

HSP 2 Score: 27.7202 bits (60), Expect = 6.847e-53
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVSEK T+
Sbjct:  174 KFLDGIYVSEKGTV 187
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.847e-53
Identity = 101/181 (55.80%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIR FL G
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDG 178

HSP 2 Score: 27.7202 bits (60), Expect = 6.847e-53
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVSEK T+
Sbjct:  174 KFLDGIYVSEKGTV 187
[Close]
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.517e-52
Identity = 101/181 (55.80%), Postives = 128/181 (70.72%), Query Frame = 3 
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L GNDIELVS SAALI Q   VKNKDIR FL G
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDG 178

HSP 2 Score: 27.7202 bits (60), Expect = 1.517e-52
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVSEK T+
Sbjct:  174 KFLDGIYVSEKGTV 187
The following BLAST results are available for this feature:
BLAST of DR908405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL9_PEA2.090e-8586.1960S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL92_ARATH3.889e-8481.7760S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL91_ARATH1.100e-8378.7660S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL9_ORYSJ5.552e-8080.6660S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL9_MOUSE4.029e-5355.8060S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_MACFA5.252e-5356.3560S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_BOVIN5.252e-5355.8060S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_RAT6.847e-5355.8060S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_HUMAN6.847e-5355.8060S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]
RL9_PONAB1.517e-5255.8060S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16533 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908405 ID=DR908405; Name=DR908405; organism=Citrus sinensis; type=EST; length=648bp
CTAGCTTAAGCGTAGGAGGAGAAGAAGAAGGAAGATATTACAGAGAGAGG
AAAATGAAGACAATTCTCTCTTCAGAGACTATGGACATCCCAGATGGGGT
GAAAGTCAAGATAAATGCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTA
AGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTTCCATCTCATGACT
GACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTC
TCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGCAATC
TCATCACTGGTGTTACCAAGGGCTATCGCTACAAGATGAGATTTGTGTAC
GCTCACTTTCCCATCAACGCCTCCATCGGTAACAATAACAAGGCCATTGA
GATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATGCTTG
ATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGTTCTT
GATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCAATCA
GAAATGCCATGTGAAGAACAAGGACATTAGGAATTTCTTGATGGGATCTA
TGTCAGTGAGAAAAGCACCATACTTGGAGAAGAATGATGATTAGCTTT
back to top