DR908401

Overview
NameDR908401
Unique NameDR908401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10107 contig Csv1_Contig10107:99..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908401 vs. ExPASy Swiss-Prot
Match: PSF1_DICDI (Probable DNA replication complex GINS protein PSF1 OS=Dictyostelium discoideum GN=gins1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.491e-13
Identity = 51/157 (32.48%), Postives = 81/157 (51.59%), Query Frame = 3
Query:  180 MHGRLGSRLVKELASGEKGQLTHFNDELLNEVIKECSENFLAL-QSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKVDLNLNVDMVPPKDPYIKGR 647
            M  +    L+KEL   +   + H+ND  +   I E     +AL + LI+ + E     +      H  A+  H S+ R+KRC++AY+  R   I+   W+ G  L  LP++++E+LS  E  +F  +   L  Y SKV L+L +D  PPK+ YI+ R
Sbjct:    1 MFTKTAIELIKELRGTDS--IPHYNDTSIKATIDE----MIALYEDLIKTITEHKEQKKEPFYLQH--AITFHNSINRDKRCILAYLNERLNRIKEYRWSSGQSL--LPDQLKERLSQNEIQFFSEYDKILTEYNSKVGLDLTIDPQPPKELYIEVR 147          
BLAST of DR908401 vs. ExPASy Swiss-Prot
Match: PSF1_BOVIN (DNA replication complex GINS protein PSF1 OS=Bos taurus GN=GINS1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 48/153 (31.37%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  204 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGAL-INHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKV----DLNLNVDMVPPKDPYIKGR 647
            LV+EL    +G+L  FN++ L +V++E       +++L  + Q +  + +++   D    +   H SL+RN+RC +AY+Y+R   I+ L W  G     LP  ++  +S  E D+F R+  +L +YM  +     L++  DM PPK  YI+ R
Sbjct:    9 LVRELHRAAEGRLPAFNEDGLRQVLEE-------MKALYEQNQSDVNEAKSSGRGDLIPTIKFRHCSLLRNQRCTVAYLYDRLLRIRALRWEYG---SVLPSALRFHMSAEEMDWFNRYKKSLATYMRSLGGDEGLDITQDMKPPKSLYIEVR 151          
BLAST of DR908401 vs. ExPASy Swiss-Prot
Match: PSF1_HUMAN (DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 45/153 (29.41%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  204 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGAL-INHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKV----DLNLNVDMVPPKDPYIKGR 647
            L++EL    +GQL  FN++ L +V++E       +++L  + Q +  + ++   +D    +   H SL+RN+RC +AY+Y+R   I+ L W  G     LP  ++  ++  E ++F  +  +L +YM  +     L++  DM PPK  YI+ R
Sbjct:    9 LIRELHRAPEGQLPAFNEDGLRQVLEE-------MKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYG---SVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKSLYIEVR 151          
BLAST of DR908401 vs. ExPASy Swiss-Prot
Match: PSF1_MOUSE (DNA replication complex GINS protein PSF1 OS=Mus musculus GN=Gins1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.502e-11
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 3
Query:  204 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGL-DFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKV----DLNLNVDMVPPKDPYIKGR 647
            LV+EL    +GQL  FN++ L +V++E    +   QS + + +  G  D   T           H +L+RN+RC +AY+Y+R   I+ L W  G     LP  ++  +S  E ++F  +  +L +YM  +     L++  D+ PPK  YI+ R
Sbjct:    9 LVRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSAGRGDLIPT-------VKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYG---SVLPNSLRFHMSAEETEWFNHYKKSLATYMRSLGGDEGLDITQDVKPPKSLYIEVR 151          
The following BLAST results are available for this feature:
BLAST of DR908401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSF1_DICDI3.491e-1332.48Probable DNA replication complex GINS protein PSF1... [more]
PSF1_BOVIN1.016e-1231.37DNA replication complex GINS protein PSF1 OS=Bos t... [more]
PSF1_HUMAN1.467e-1129.41DNA replication complex GINS protein PSF1 OS=Homo ... [more]
PSF1_MOUSE2.502e-1130.72DNA replication complex GINS protein PSF1 OS=Mus m... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16529 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-08_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908401 ID=DR908401; Name=DR908401; organism=Citrus sinensis; type=EST; length=648bp
CCGTCACCCAAAAACATTTGAGCGCCAAATTTGAAAAGCTTCAAAAACTT
CCCCGCCAAAAGCGATGACCAGAAGTTAGATCACATGCCTAAGAATGAAT
TCGATCATTTTGATCCATTTTCTCACTATTTCGATCTCGCCAAACAAACA
GCCATAACGGGATCTCGAAAGGAAAAGAAATGCACGGAAGATTGGGAAGC
CGACTGGTAAAGGAACTTGCAAGTGGTGAAAAAGGCCAGCTCACGCATTT
CAATGATGAGCTTTTAAATGAAGTAATTAAAGAATGCAGTGAAAATTTCC
TCGCGCTTCAGTCCTTGATAAGGAAAATGCAGGAAGAAGGATTGGATTTT
CAAACAACAAGAAATGCAGATCACTATGGAGCACTTATCAACCACCTTTC
TCTAATTCGCAACAAACGCTGCCTGATGGCATACGTGTACAACCGAGCAG
AAATGATACAGAATTTGGCATGGACAGTTGGGCTTAGGCTCTTTGAGCTG
CCTGAAGAAATTCAAGAAAAACTCAGTCACTTGGAAAAGGATTATTTTAA
GAGACATTCTGCAGCATTGGAATCATACATGTCGAAAGTGGATCTTAACT
TGAATGTGGATATGGTGCCACCAAAAGACCCCTACATCAAGGGGAGGG
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