DR908400

Overview
NameDR908400
Unique NameDR908400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6332 contig Csv1_Contig6332:312..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.644e-79
Identity = 132/214 (61.68%), Postives = 159/214 (74.30%), Query Frame = 2
Query:    5 HGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            HG++L I DYP+ANDGL LWDA+K+WVT+YV HYYPD  L+ SDEELQ WW+E+R +GH +KKDEPWWPVLKT  DLI ++TTIAWV SGHHAAVNFGQY YGGYFPNRPT  R  +P ED T E  K F E PE  LL+ +P+Q QA  VM+ +DLLSTHSPDEEY+G++ E +W   P       R   ++Q LE +ID+RN N  LKNR G
Sbjct:  655 HGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAG 868          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.443e-67
Identity = 116/212 (54.72%), Postives = 151/212 (71.23%), Query Frame = 2
Query:   11 LKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            L+L I+DYPYA+DGL +W ++KQW ++YV+ YY     V  DEEL+AWW E+RT GHA+KKDEPWWPV  T ++L++I+T I WV SGHHAAVNFGQY Y GYFPNRPTV R N+P E+   +E K F+ +PE  LL+  P+Q QA+ VM  +D+LS+HSPDEEY+G+  EPAW   P  K    +   +++E E  ID RN+N   KNR G
Sbjct:  657 LELAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCG 868          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.034e-65
Identity = 117/215 (54.42%), Postives = 148/215 (68.84%), Query Frame = 2
Query:    5 HGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTK-EEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            HGL+L IEDYP+ANDGL +WDA+K WV  YV  +YPD   V  DEELQA+WTE+RT GH +KKD PWWP L +P+ L   +TTI WVA+ HHAAVNFGQY +GGYFPNRP++ART +P E+       + FL+ P+ AL  CFP+Q QA  VM V+D+LSTHS DEEYLG E    W    + +        +++E+E +ID RN +  LKNR G
Sbjct:  699 HGLRLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCG 913          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.351e-65
Identity = 117/215 (54.42%), Postives = 148/215 (68.84%), Query Frame = 2
Query:    5 HGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTK-EEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            HGLKL IEDYP+ANDGL +WDA+K WV  YV  +YPD   V  DEELQA+WTE+RT GH +KKD PWWP L +P+ L   +TTI WVA+ HHAAVNFGQY +GGYFPNRP++ART +P E+       + FL+ P+ AL  CFP+Q QA  VM V+D+LS+HS DEEYLG E    W    + +        +++E+E +ID RN +  LKNR G
Sbjct:  682 HGLKLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCG 896          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.385e-62
Identity = 117/220 (53.18%), Postives = 152/220 (69.09%), Query Frame = 2
Query:    2 PHG-LKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWG**PSYKGCI*RV*PQMQELERII----DDRNSNENLKNRTG 646
            P+G L+L IEDYPYANDGL +WDA+KQW   YV HYYP  + +  DEELQAWWTE+RT GHA+K+DEPWWP L + ++L + + TI WV SGHHAAVNFGQY   GY PNRPT+AR N+P E    ++ + F+E PE  LL  FP+Q+Q+  V+ ++DLLSTHS DEEY+G   EPAW    +  G I +   + +E  R I    D+ N++ + KNR G
Sbjct:  684 PNGELELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTE-IGGDDMRDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAW----TKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHG 898          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.554e-56
Identity = 102/212 (48.11%), Postives = 137/212 (64.62%), Query Frame = 2
Query:   11 LKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            L+L IEDYPYANDGL +WDA+KQW ++YV HYYP    +  DEELQ WWTE+RT GH +K+DEPWWP L   + L++++ TI WV S HHAAVNFGQY   GY PN P++AR N+P E    EE  +F   PE   L   P+Q Q + VM  +DLLS+H+ DEEY+G   EPAW               +M+++   +++ N +++ +NR G
Sbjct:  689 LELAIEDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCE-MGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHG 899          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.655e-55
Identity = 102/216 (47.22%), Postives = 139/216 (64.35%), Query Frame = 2
Query:    2 PHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPA-WG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            PHGLKL +EDYPYANDGL LW A++ WV  YV  YY + +L+++D ELQAW++E   VGHA+ +D  WWP L T +DL+ +ITTI W+AS  HAA+NFGQY YGGY PNRP + R  +P  D++  E+ SF+E P+       P+  Q    M V+D LSTHSPDEEY+G+  +P+ W               ++  +E+ ID RN + + +NR G
Sbjct:  685 PHGLKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIP--DESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCG 898          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.655e-55
Identity = 102/216 (47.22%), Postives = 140/216 (64.81%), Query Frame = 2
Query:    2 PHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPA-WG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            PHGLKL IEDYPYANDGL LW A++ WV  YV  YYP+P+L+++D ELQ+W++E   VGHA+ +D  WWP L T  DL+ I+TT+ W+AS  HAA+NFGQY YGGY PNRP + R  +P  D++  E+ SF+  PE       P+  Q    M V+D LSTHSPDEEY+G+  +P+ W               ++  +E+ I+ RN++ + +NR G
Sbjct:  678 PHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIP--DESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCG 891          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.162e-55
Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 2
Query:    8 GLKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYL--GKEMEPAWG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            G++L I+DYPYA DGL +W A+K  V +YV H+Y D   + SD ELQAWW EI+  GH +KKDEPWWP L T QDL +I+T + W+ASG HAA+NFGQY +GGY PNRPT+ R  +P E  T  +++ F+  P+ + L   P Q QA  VM V + LSTHSPDEEYL   +E++  W           +   ++ ++E+ I++RN ++ LKNRTG
Sbjct:  677 GVRLVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQE--TDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTG 889          
BLAST of DR908400 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.073e-54
Identity = 100/215 (46.51%), Postives = 137/215 (63.72%), Query Frame = 2
Query:    2 PHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHYYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWG**PSYKGCI*RV*PQMQELERIIDDRNSNENLKNRTG 646
            PHG++L IEDYPYA DGL++W A+K WVT+Y + YY     +  D ELQAWW E+R VGH +KK+EPWWP ++TPQ+LI+  TTI W+AS  HAAVNFGQY Y GY PNRPTV+R  +P  +    E++     P+ A L+   AQ Q L  + ++++LS H+ DE YLG+   P W           R   ++ ++E+ I  RN +  L NR+G
Sbjct:  621 PHGVRLLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMP--EPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSG 833          
The following BLAST results are available for this feature:
BLAST of DR908400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
LOX2_ARATH1.644e-7961.68Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU1.443e-6754.72Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ1.034e-6554.42Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ1.351e-6554.42Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU2.385e-6253.18Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU2.554e-5648.11Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX4_ARATH1.655e-5547.22Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH1.655e-5547.22Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH2.162e-5548.37Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX1_SOLTU1.073e-5446.51Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16528 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-01_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908400 ID=DR908400; Name=DR908400; organism=Citrus sinensis; type=EST; length=648bp
TCCTCATGGCCTTAAGCTAAACATCGAAGACTACCCATATGCCAACGATG
GGCTCGATCTCTGGGATGCCTTAAAACAATGGGTTACTAACTATGTGAAC
CACTATTATCCCGATCCAAGCCTTGTAGAGTCTGATGAGGAGCTCCAAGC
ATGGTGGACTGAAATTCGAACCGTGGGACACGCCGAGAAAAAGGATGAAC
CATGGTGGCCTGTCCTGAAAACCCCTCAGGATTTAATTGAAATCATCACA
ACCATCGCTTGGGTTGCATCCGGTCACCATGCAGCTGTGAACTTTGGGCA
ATATTTATACGGAGGCTATTTCCCTAACAGGCCAACTGTTGCAAGAACCA
ACCTGCCAAATGAAGATCAAACAAAAGAAGAATGGAAATCCTTTCTCGAA
AAACCTGAAGCTGCACTTTTGCGATGCTTCCCTGCACAGTTTCAAGCTCT
TACGGTAATGCTCGTTATTGATTTGCTGTCGACTCATTCGCCTGATGAAG
AGTATTTGGGGAAGGAAATGGAGCCGGCATGGGGGTGATGACCCAGTTAT
AAAGGCTGCATTTGAAGAGTTTAACCTCAAATGCAGGAGCTTGAAAGGAT
CATTGATGACAGAAATTCGAATGAGAATTTGAAGAACAGAACTGGAGC
back to top