DR908390

Overview
NameDR908390
Unique NameDR908390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908390_ssr481 microsatellite DR908390_ssr481:481..492. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6347 contig Csv1_Contig6347:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.996e-41
Identity = 79/92 (85.87%), Postives = 88/92 (95.65%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 278
            TFVKVYKSGSVGRSLDI+RFS+Y ELREELGQMFGI+G+ +DP RSGWQLVFVDRENDVLLLGDDPWE+FV++VWYIKILSPEDV KMG+QG
Sbjct:  720 TFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQG 811
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.996e-41
Identity = 79/92 (85.87%), Postives = 88/92 (95.65%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 278
            TFVKVYKSGSVGRSLDI+RFS+Y ELREELGQMFGI+G+ +DP RSGWQLVFVDRENDVLLLGDDPWE+FV++VWYIKILSPEDV KMG+QG
Sbjct:  718 TFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQG 809
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.219e-41
Identity = 78/91 (85.71%), Postives = 86/91 (94.51%), Query Frame = 3 
Query:    6 FVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 278
            FVKVYKSGSVGRSLDISRFSSY+ELREELG+MF IEG  EDPLRSGWQLVFVD+END+LLLGDDPWE+FV+NVWYIKILSPEDV +MG+ G
Sbjct:  707 FVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHG 797
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.418e-40
Identity = 81/114 (71.05%), Postives = 97/114 (85.09%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVE--SFSPSSG--QRANSRGNC 332
            TFVKVYKSGS GRSLDIS+FSSY+ELR EL +MFG+EG+ EDP+RSGWQLVFVDRENDVLLLGDDPW  FVS+VW IKILSP++VQ+MG++G+E  + +PSS    +  S GNC
Sbjct:  797 TFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSAPSSNNVDKLPSNGNC 910
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.424e-38
Identity = 75/109 (68.81%), Postives = 95/109 (87.16%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGN 329
            TFVKVYKSG+VGR LDI+RFSSY+ELR E+G++FG+EG+ EDPLRSGWQLVFVDRE+DVLL+GDDPW+ FV++V  IKILSP++VQ+MG+ G+E FS S+ +  NS  N
Sbjct:  778 TFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDN 886
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.424e-38
Identity = 75/109 (68.81%), Postives = 95/109 (87.16%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGN 329
            TFVKVYKSG+VGR LDI+RFSSY+ELR E+G++FG+EG+ EDPLRSGWQLVFVDRE+DVLL+GDDPW+ FV++V  IKILSP++VQ+MG+ G+E FS S+ +  NS  N
Sbjct:  778 TFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDN 886
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.509e-35
Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNC 332
            TFVKVYKSGS+GRSLDISRFSSY ELR EL ++FG+EG+ EDP+RSGWQLVFVDREND+LL+GDDPW+ F ++VW IKILSP++VQ++  +G +    S G R      C
Sbjct:  767 TFVKVYKSGSLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSVWCIKILSPQEVQQL-VRGGDGLLSSPGARMQQSNAC 875
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 72/106 (67.92%), Postives = 91/106 (85.85%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANS 320
            TFVKVYKSG+ GRSLDI+RFSSY+ELR ELG++FG+EG+ E+PLRSGWQLVFVDRE+DVLL+GDDPW+ FV++V  IKILSP++VQ+MG+   E  S + G+R  S
Sbjct:  787 TFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKP-FELLSSAPGKRLGS 891
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 72/106 (67.92%), Postives = 91/106 (85.85%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANS 320
            TFVKVYKSG+ GRSLDI+RFSSY+ELR ELG++FG+EG+ E+PLRSGWQLVFVDRE+DVLL+GDDPW+ FV++V  IKILSP++VQ+MG+   E  S + G+R  S
Sbjct:  787 TFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKP-FELLSSAPGKRLGS 891
[Close]
BLAST of DR908390 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.129e-27
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 3 
Query:    3 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQ 308
            T+ KV K GSVGRS+D++R+S Y+ELR +L +MFGIEG+ EDPL S W+LV+ D END+LL+GDDPWE FV+ V  IKILS  +VQ+M   G  +  P++ Q
Sbjct:  959 TYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMSLDGDLAAIPTTNQ 1060
The following BLAST results are available for this feature:
BLAST of DR908390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ARFL_ORYSJ3.996e-4185.87Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI3.996e-4185.87Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFH_ARATH5.219e-4185.71Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFF_ARATH4.418e-4071.05Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFF_ORYSJ2.424e-3868.81Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI2.424e-3868.81Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFY_ORYSJ2.509e-3564.55Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSJ4.280e-3567.92Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI4.280e-3567.92Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFS_ARATH1.129e-2756.86Auxin response factor 19 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16518 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908390 ID=DR908390; Name=DR908390; organism=Citrus sinensis; type=EST; length=650bp
GGACATTTGTCAAGGTCTATAAATCGGGTTCGGTTGGGCGCTCACTAGAC
ATCTCCCGGTTCAGCAGCTATAATGAGCTGCGGGAAGAGCTGGGTCAGAT
GTTTGGAATTGAGGGGAAGTTTGAAGACCCTCTTAGATCAGGCTGGCAGC
TTGTATTCGTCGACAGGGAGAATGACGTGCTTCTCCTTGGAGACGACCCA
TGGGAGGCATTTGTGAGTAATGTTTGGTATATCAAGATACTTTCACCGGA
GGATGTGCAGAAAATGGGTGAGCAAGGGGTTGAGTCCTTCAGCCCAAGCT
CAGGTCAACGGGCAAATAGCCGTGGCAATTGCGGTCGTGATCCTGTTGGT
TCGCTTGAATATTGATGTTAGATAACTCTATTACATAATGCCACGAACTG
TGTGTGCAACCCCCCTGTGTCTCCAGGTTTATTGTTACCAGATAACTAAA
ACCCACGTTTCAGACTAGACTAGTAGTTTAATGATGATGATGCCTATGTA
CGATAAATATAATACTGAAGTCGATTAGATAACTAAACTACGTTGCAAAT
TGGAACCTATTTCTTTTGACCGTGTTTTGGTTGTATTAATATGAAAGTGC
TGTCATTGCCTTAGTTAATACTGCCAATGTTGTGCACTGACCCTTGAGTT
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