DR908389

Overview
NameDR908389
Unique NameDR908389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig416 contig Csv1_Contig416:35..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908389 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.259e-52
Identity = 106/193 (54.92%), Postives = 130/193 (67.36%), Query Frame = 1
Query:   79 METERKKQE---LRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGY 648
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP              S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  ++TNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GY
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGY 193          
BLAST of DR908389 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.248e-26
Identity = 72/200 (36.00%), Postives = 102/200 (51.00%), Query Frame = 1
Query:   94 KKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVH------YAAAESKHLLLTN---------SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGY 648
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  +  E Q  G            Y+  E     L +         +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GYTV  Y
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALY 215          
BLAST of DR908389 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.944e-25
Identity = 74/205 (36.10%), Postives = 105/205 (51.22%), Query Frame = 1
Query:   85 TERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG-----------------PRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGY 648
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L  E +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSY 217          
BLAST of DR908389 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 66/203 (32.51%), Postives = 101/203 (49.75%), Query Frame = 1
Query:   67 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGY 648
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  Y
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATY 219          
BLAST of DR908389 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 66/203 (32.51%), Postives = 101/203 (49.75%), Query Frame = 1
Query:   67 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGY 648
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  Y
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATY 219          
BLAST of DR908389 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.256e-17
Identity = 58/190 (30.53%), Postives = 92/190 (48.42%), Query Frame = 1
Query:   79 METERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGY 648
            M  E +++ L++L F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P             +    D   PP+ K+V++Q +S+ + A +    +       G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++GY V  Y
Sbjct:    1 MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSY 186          
BLAST of DR908389 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 55/187 (29.41%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   97 KQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPR--------AAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGY 633
            + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP                  + + P L K+ +SQ    +  A++  +  V++      R        AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V  +  + Y
Sbjct:   38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQA---LTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDY 209          
BLAST of DR908389 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 57/164 (34.76%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  166 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRK---FDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGY 648
            LY YAK  +GPL+  V TVE AV  VV PVY +F  VP             A RK    D H P   K+V+SQ           A+ +V E +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  Y
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVP-------VELLKYADRKVGELDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAY 151          
The following BLAST results are available for this feature:
BLAST of DR908389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH2.259e-5254.92REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI1.248e-2636.00Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH8.944e-2536.10REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ3.889e-2032.51REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI3.889e-2032.51REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR5.256e-1730.53Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH4.449e-1629.41REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
SRP_PHAVU4.449e-1634.76Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16517 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-12_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908389 ID=DR908389; Name=DR908389; organism=Citrus sinensis; type=EST; length=650bp
GCTGCAATCAATAGCAAGCTAATTTCTCGCGAGATCTAAAAGCAATATCG
AATAATTCATCTTTTGCGCAGTGAAGATATGGAGACTGAGAGGAAGAAAC
AGGAACTGAGGCATCTTGGATTTATGAGGATAGCCGCGATTAAGGCTCTG
GTGTGCGTGTCGAGTTTGTACGACTACGCAAAACGCAACTCGGGGCCGCT
ACGCTCGCCGGTTGGGACTGTCGAAAGCGCCGTGACTGCCGTCGTGGGAC
CTGTTTATCAGAAATTCAAGGGCGTGCCTGATGATCTCCTCGTTTTTCTT
GATAAGAAGGTGGATGATGCTTCACGCAAGTTTGACGAGCACGCTCCCCC
TTTGGCCAAGCGGGTTGCCAGCCAAGTACATAGTCTAATTGAAACAGCAT
CACAGAAAGCTCAAAAGCTTGTGATTGAGGCCCAAACCGGGGGGCCTCGA
GCAGCTGTCCATTATGCTGCTGCTGAGTCTAAACACCTTCTGCTAACAAA
TTCCGTGAAAGCATGGTATAAACTAAACCACTATGCATTGTTCCACACAA
TGGCAGATATGGCTGTTCCCACAGCTGCACAGTGGTCCAAGAAGTATAAC
CATCTTGTCGTGGAGATGACGAAGAAGGGTTACACAGTCTTTGGCTATCT
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