DR908370

Overview
NameDR908370
Unique NameDR908370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908370_ssr38 microsatellite DR908370_ssr38:38..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.209e-85
Identity = 168/212 (79.25%), Postives = 176/212 (83.02%), Query Frame = 2
Query:   74 DFSFGNRRGLESNNNEGEKVGDEK------------------PKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            DFSFGNR   E +     + GDEK                  P AMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGL+WSLV FRWN +MPAI+ KSISILSDAGLGMAMFSLGLFMALQPRIIACGN +A F+MAVRFLTGPAVMAAASIAVGLRG LLHVAIVQAALPQGIVPFVFAKEY+VHPDILST VIFGMLIALPITLVYYILLG
Sbjct:  384 DFSFGNRGVAERD----AEAGDEKSVAAAVSGEHGKPGLTPAPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIILKSISILSDAGLGMAMFSLGLFMALQPRIIACGNKVATFAMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTAVIFGMLIALPITLVYYILLG 591          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.931e-83
Identity = 163/209 (77.99%), Postives = 173/209 (82.78%), Query Frame = 2
Query:   74 DFSFGNRRGLESNNNEGEKVGDEK---------------PKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            DFSFGNR  ++ +     + GDEK               P AMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGL+WSLV FRWN +MPAIV KSISILSDAGLGMAMFSLGLFMALQP IIACGN +A ++MAVRFL GPAVMAAAS AVGLRG LLHVAIVQAALPQGIVPFVFAKEY+VHP ILST VIFGMLIALPITLVYYILLG
Sbjct:  390 DFSFGNRGVMDRD----AEAGDEKAAAAAGADPSKAMAAPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIVLKSISILSDAGLGMAMFSLGLFMALQPHIIACGNKVATYAMAVRFLAGPAVMAAASFAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPSILSTAVIFGMLIALPITLVYYILLG 594          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN1B_ORYSJ (Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 9.583e-83
Identity = 159/207 (76.81%), Postives = 179/207 (86.47%), Query Frame = 2
Query:   74 DFSFGNRRGLESNNNEGEKVGDE-----KPK--------AMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            ++SFGN+   E +     K+G       +PK        AMPP SVMTRLILIMVWRKLIRNPNTYSSL+G++WSLVS+RW ++MPAI+A+SISILSDAGLGMAMFSLGLFMALQPRIIACGNS+A+++MAVRFL GPAVMAAASIAVGLRGVLLH+AIVQAALPQGIVPFVFAKEYNVHP+ILST VIFGMLIALPITLVYYILLG
Sbjct:  349 EYSFGNKN--EKDGPTLSKLGSNSTAQLRPKDDGEGMAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPITLVYYILLG 553          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.610e-80
Identity = 152/200 (76.00%), Postives = 169/200 (84.50%), Query Frame = 2
Query:   74 DFSFGNRR------GLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            +FSFGN+         +  NN   K    + K MPPTSVMTRLILIMVWRKLIRNPN+YSSL G+ WSL+SF+WN++MPA++AKSISILSDAGLGMAMFSLGLFMAL PRIIACGN  AAF+ A+RF+ GPAVM  AS AVGLRGVLLHVAI+QAALPQGIVPFVFAKEYNVHPDILST VIFGMLIALPITL+YYILLG
Sbjct:  424 EFSFGNKDDDSKVLATDGGNNISNKT--TQAKVMPPTSVMTRLILIMVWRKLIRNPNSYSSLFGITWSLISFKWNIEMPALIAKSISILSDAGLGMAMFSLGLFMALNPRIIACGNRRAAFAAAMRFVVGPAVMLVASYAVGLRGVLLHVAIIQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLLYYILLG 621          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN2_ORYSJ (Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 7.593e-80
Identity = 147/172 (85.47%), Postives = 160/172 (93.02%), Query Frame = 2
Query:  140 EKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            E    MPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWN+QMP+I+  SISILSDAGLGMAMFSLGLFMALQP+II+CG ++A F+MAVRFLTGPAV+AA SIA+GLRGVLLHVAIVQAALPQGIVPFVFAKEYN HP ILST VIFGMLIALPIT++YY+LLG
Sbjct:  458 EAAHPMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNIQMPSIIKGSISILSDAGLGMAMFSLGLFMALQPKIISCGKTVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHVAIVQAALPQGIVPFVFAKEYNCHPQILSTAVIFGMLIALPITILYYVLLG 629          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.428e-79
Identity = 147/169 (86.98%), Postives = 159/169 (94.08%), Query Frame = 2
Query:  149 KAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            K MPP SVMTRLILIMVWRKLIRNPNTYSSLIGL+W+LV+FRW+V MP I+ +SISILSDAGLGMAMFSLGLFMALQP++IACGNS+A F+MAVRFLTGPAVMA A+IA+GLRG LL VAIVQAALPQGIVPFVFAKEYNVHP ILSTGVIFGMLIALPITLVYYILLG
Sbjct:  471 KNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQQSISILSDAGLGMAMFSLGLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLG 639          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 8.395e-79
Identity = 150/185 (81.08%), Postives = 164/185 (88.65%), Query Frame = 2
Query:  104 ESNNNEGEKVGDEKP-KAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            E N  E  + G+  P K MPP SVMTRLILIMVWRKLIRNPNTYSSLIGL+W+LV+FRW+V MP I+ +SISILSDAGLGMAMFSLGLFMALQP++IACGNS A F+MAVRF TGPAVMA A++A+GLRG LL VAIVQAALPQGIVPFVFAKEYNVHP ILSTGVIFGMLIALPITLVYYILLG
Sbjct:  434 ELNPKEAIETGETVPVKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWDVAMPKIIQQSISILSDAGLGMAMFSLGLFMALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAIGLRGDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLG 618          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN3A_ORYSJ (Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.443e-78
Identity = 149/167 (89.22%), Postives = 154/167 (92.22%), Query Frame = 2
Query:  155 MPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            MPP SVMTRLILIMVWRKLIRNPNTYSSL+GL WSLV+FRW+V MPAIV KSISILSDAGLGMAMFSLGLFMALQP IIACG S A  SMAVRFL GPAVMAAASIA+GLRG LLHVAIVQAALPQGIVPFVFAKEYNVHP ILST VIFGMLIALPITL+YYILLG
Sbjct:  451 MPPASVMTRLILIMVWRKLIRNPNTYSSLLGLAWSLVAFRWHVSMPAIVEKSISILSDAGLGMAMFSLGLFMALQPSIIACGKSAAVVSMAVRFLAGPAVMAAASIAIGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLG 617          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.442e-78
Identity = 147/185 (79.46%), Postives = 163/185 (88.11%), Query Frame = 2
Query:  101 LESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            LE+   +G   G      MPPTSVMTRLILIMVWRKLIRNPNTYSSLIGL+W+LV++RW+V MP I+ +SISILSDAGLGMAMFSLGLFMALQP+IIACGNS+A F+MAVRF+TGPA+MA A IA+GL G LL +AIVQAALPQGIVPFVFAKEYNVHP ILSTGVIFGMLIALPITLVYYILLG
Sbjct:  434 LEAAGGDG---GGNNGTHMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAYRWHVAMPKILQQSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQAALPQGIVPFVFAKEYNVHPTILSTGVIFGMLIALPITLVYYILLG 615          
BLAST of DR908370 vs. ExPASy Swiss-Prot
Match: PIN2_ARATH (Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 5.442e-78
Identity = 144/183 (78.69%), Postives = 163/183 (89.07%), Query Frame = 2
Query:  119 EGEKVGDEKP----KAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 655
            +G  V D  P    + MPP SVMTRLILIMVWRKLIRNPNTYSSL GL WSLVSF+WN++MP I++ SISILSDAGLGMAMFSLGLFMALQP+IIACG S+A F+MAVRFLTGPAV+AA SIA+G+RG LLH+AIVQAALPQGIVPFVFAKEYNVHPDILST VIFGML+ALP+T++YY+LLG
Sbjct:  464 KGSDVEDGGPGPRKQQMPPASVMTRLILIMVWRKLIRNPNTYSSLFGLAWSLVSFKWNIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIRGDLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPVTVLYYVLLG 646          
The following BLAST results are available for this feature:
BLAST of DR908370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PIN1C_ORYSJ1.209e-8579.25Probable auxin efflux carrier component 1c OS=Oryz... [more]
PIN1_ORYSJ1.931e-8377.99Auxin efflux carrier component 1 OS=Oryza sativa s... [more]
PIN1B_ORYSJ9.583e-8376.81Probable auxin efflux carrier component 1b OS=Oryz... [more]
PINI_ARATH2.610e-8076.00Auxin efflux carrier component 1 OS=Arabidopsis th... [more]
PIN2_ORYSJ7.593e-8085.47Probable auxin efflux carrier component 2 OS=Oryza... [more]
PIN3_ARATH6.428e-7986.98Auxin efflux carrier component 3 OS=Arabidopsis th... [more]
PIN7_ARATH8.395e-7981.08Auxin efflux carrier component 7 OS=Arabidopsis th... [more]
PIN3A_ORYSJ2.443e-7889.22Probable auxin efflux carrier component 3a OS=Oryz... [more]
PIN4_ARATH5.442e-7879.46Auxin efflux carrier component 4 OS=Arabidopsis th... [more]
PIN2_ARATH5.442e-7878.69Auxin efflux carrier component 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16498 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908370 ID=DR908370; Name=DR908370; organism=Citrus sinensis; type=EST; length=655bp
GAGATTGGCTGTGTCACCACAAGGAGGAAAAGGAGAGGGTGGTGGTGGTC
ATGAAGAGTACATGGAGAGAGAAGATTTTAGCTTTGGCAACAGAAGAGGA
TTGGAGAGCAACAACAATGAAGGAGAAAAAGTTGGTGATGAGAAGCCTAA
AGCTATGCCGCCGACAAGTGTAATGACAAGGCTTATACTGATTATGGTTT
GGAGAAAACTTATCAGAAATCCCAACACTTACTCCAGCTTAATTGGCCTC
GTTTGGTCATTAGTTTCGTTCAGGTGGAATGTACAAATGCCTGCTATTGT
AGCAAAGTCCATCTCCATTCTGTCAGATGCAGGTCTCGGCATGGCCATGT
TCAGTCTTGGTCTGTTCATGGCTTTGCAACCAAGGATAATAGCATGTGGA
AATTCCATTGCAGCTTTTTCAATGGCTGTGAGATTCCTCACAGGTCCAGC
TGTCATGGCAGCTGCTTCCATTGCTGTTGGCCTCAGAGGCGTTCTCTTAC
ACGTTGCCATTGTACAGGCAGCTCTCCCACAAGGAATTGTCCCCTTTGTC
TTTGCAAAGGAGTACAACGTACACCCTGATATTCTCAGCACAGGAGTCAT
ATTTGGGATGCTAATTGCACTGCCCATAACCCTTGTCTACTACATCTTGT
TGGGG
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