DR908367

Overview
NameDR908367
Unique NameDR908367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:343..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908367 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.313e-31
Identity = 95/218 (43.58%), Postives = 115/218 (52.75%), Query Frame = 2 
Query:    5 IIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD-ADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXXNYNIYKPVARSGGINVDMNVVPEP-ETTSSSNDPPTSLSLSLPGVD-----XXXXXXXXXXXXTQAVNAKASVPAPVSSDSGSKGLV--------GFSKEFMAVMQEMI 613
            I RAHA+FGNKWATIARLLNGRTDNA+KNHWNSTLKRK             C GYD   +  S   +P  +KRSVSAGS  PV TGLYM                    +  ++KPV R G +     V+P P ET+SSS+DPPTSLSLSLPG D                 T + +   +  + +    G +G +        G   EFMAV+QEMI
Sbjct:   69 IARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK-------------CGGYDHRGYDGSEDHRP--VKRSVSAGSP-PVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAV-----VLPLPIETSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRGAIEEMGKSFPGNGGEFMAVVQEMI 265
The following BLAST results are available for this feature:
BLAST of DR908367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYB44_ARATH1.313e-3143.58Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16495 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908367 ID=DR908367; Name=DR908367; organism=Citrus sinensis; type=EST; length=656bp
GATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTGGGCCACCATCG
CGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGAATCACTGGAAC
TCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAGAACGGTATTTT
TTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAGTATTCAGCAAC
AGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGAGTGTGCCCGTG
ACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGATCCGACGTCAG
CGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATATATACAAACCCG
TGGCGAGATCTGGCGGTATCAATGTGGACATGAATGTGGTGCCCGAGCCG
GAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTGAGTCTGTCCCT
TCCTGGTGTGGATTCCTCCTCAGAAGTTTCAAACAAAGTGAGTGAGTCAA
CTCAGGCAGTGAACGCAAAAGCTTCGGTGCCGGCTCCAGTAAGTAGTGAC
AGTGGGTCGAAGGGATTAGTGGGGTTTAGTAAAGAGTTTATGGCTGTGAT
GCAGGAGATGATAAGCAGGAAGTGAGGACGTACATGGCGGCGCTTGAGCA
GCAGAG
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