DR908359

Overview
NameDR908359
Unique NameDR908359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10531 contig Csv1_Contig10531:24..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908359 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.382e-49
Identity = 102/184 (55.43%), Postives = 124/184 (67.39%), Query Frame = 3
Query:   84 METERKKQE---LRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMT 626
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP              S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  ++TNSVK W KLN Y   H M D A+P AA +S +YN LV +MT
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMT 184          
BLAST of DR908359 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 67/187 (35.83%), Postives = 95/187 (50.80%), Query Frame = 3
Query:   99 KKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVH------YAAAESKHLLLTN---------SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLV 614
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  +  E Q  G            Y+  E     L +         +V AW  LN   LF  +A + VPTAA WS+KYN  V
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSV 202          
BLAST of DR908359 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.483e-22
Identity = 70/198 (35.35%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   90 TERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG-----------------PRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKK 632
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L  E +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +K
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEK 210          
BLAST of DR908359 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.475e-19
Identity = 63/196 (32.14%), Postives = 98/196 (50.00%), Query Frame = 3
Query:   72 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKK 632
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKR 212          
BLAST of DR908359 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.475e-19
Identity = 63/196 (32.14%), Postives = 98/196 (50.00%), Query Frame = 3
Query:   72 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKK 632
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKR 212          
BLAST of DR908359 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.923e-16
Identity = 54/179 (30.17%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  102 KQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPR--------AAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLV 614
            + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP                  + + P L K+ +SQ    +  A++  +  V++      R        AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V
Sbjct:   38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQA---LTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAV 201          
BLAST of DR908359 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.692e-16
Identity = 54/183 (29.51%), Postives = 88/183 (48.09%), Query Frame = 3
Query:   84 METERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKK 632
            M  E +++ L++L F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P             +    D   PP+ K+V++Q +S+ + A +    +       G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++
Sbjct:    1 MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQ 179          

HSP 2 Score: 23.0978 bits (48), Expect = 7.692e-16
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  614 RGDDEEGYTVFGYLP 658
            RG  E+GY V  YLP
Sbjct:  174 RGTTEQGYRVSSYLP 188          
BLAST of DR908359 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 53/157 (33.76%), Postives = 73/157 (46.50%), Query Frame = 3
Query:  171 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRK---FDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKK 632
            LY YAK  +GPL+  V TVE AV  VV PVY +F  VP             A RK    D H P   K+V+SQ           A+ +V E +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +K
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVP-------VELLKYADRKVGELDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEK 144          
The following BLAST results are available for this feature:
BLAST of DR908359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH2.382e-4955.43REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI3.464e-2435.83Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH2.483e-2235.35REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ7.475e-1932.14REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI7.475e-1932.14REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
Y2778_ARATH5.923e-1630.17REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
SRPP_HEVBR7.692e-1629.51Small rubber particle protein OS=Hevea brasiliensi... [more]
SRP_PHAVU1.235e-1333.76Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16487 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908359 ID=DR908359; Name=DR908359; organism=Citrus sinensis; type=EST; length=658bp
TGAACGCTGCAATCAATAGCAAGCTAATTTCTCGCGAGATCTAAAAGCAA
TATCGAATAATTCATCTTTTGCGCAGTGAAGATATGGAGACTGAGAGGAA
GAAACAGGAACTGAGGCATCTTGGATTTATGAGGATAGCCGCGATTAAGG
CTCTGGTGTGCGTGTCGAGTTTGTACGACTACGCAAAACGCAACTCGGGG
CCGCTACGCTCGCCGGTTGGGACTGTCGAAAGCGCCGTGACTGCCGTCGT
GGGACCTGTTTATCAGAAATTCAAGGGCGTGCCTGATGATCTCCTCGTTT
TTCTTGATAAGAAGGTGGATGATGCTTCACGCAAGTTTGACGAGCACGCT
CCCCCTTTGGCCAAGCGGGTTGCCAGCCAAGTACATAGTCTAATTGAAAC
AGCATCACAGAAAGCTCAAAAGCTTGTGATTGAGGCCCAAACCGGGGGGC
CTCGAGCAGCTGTCCATTATGCTGCTGCTGAGTCTAAACACCTTCTGCTA
ACAAATTCCGTGAAAGCATGGTATAAACTAAACCACTATGCATTGTTCCA
CACAATGGCAGATATGGCTGTTCCCACAGCTGCACAGTGGTCCAAGAAGT
ATAACCATCTTGTCGTGGAGATGACGAAGAAGGTTACACAGTCTTTGGCT
ATCTTCCT
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