DR908358

Overview
NameDR908358
Unique NameDR908358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6343 contig Csv1_Contig6343:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_MOUSE (DDB1- and CUL4-associated factor 13 OS=Mus musculus GN=Dcaf13 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.102e-62
Identity = 106/199 (53.27%), Postives = 146/199 (73.37%), Query Frame = 3
Query:   60 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            EPL   + K  +  +DH W+  +FAT G QVDIW+  R+ P+ S  WG D++ SV+FNP E+ +L + ASDR+I LYD+R ++P +KVI+  ++N+I WNPME  NFTAANED N Y++D R LD    VHM H SAV+D+DYSPTG+EFV+ S+D++IRIF  +  RSRE+YHTKRMQ V CVK++ D+ Y++ GSD+
Sbjct:  148 EPLYTVLGKTVYTGIDHHWKDPVFATCGQQVDIWDEQRTSPVCSMNWGFDSISSVKFNPVETFLLGSCASDRNIVLYDMRQATPLKKVILEMRTNTICWNPMEAFNFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVMCVKWTSDSKYIMCGSDE 346          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_DANRE (DDB1- and CUL4-associated factor 13 OS=Danio rerio GN=dcaf13 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.205e-62
Identity = 112/199 (56.28%), Postives = 141/199 (70.85%), Query Frame = 3
Query:   60 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            EP+   + K  F  +DH      F T G  VDIW+  RS P+ SF WG D+  SVR+NP E ++LA+ ASDRSI LYD R S+P RKVIM+ +SN++ WNPME   FT ANED N Y+YD R LD    VHM H SAV+D+DYSPTGREFV+ S+D+TIRIF  + G SRE+YHTKRMQ V CVK+S D+ +++SGSD+
Sbjct:  148 EPINTILGKAVFTGIDHHQREGTFVTCGQTVDIWDEQRSSPVLSFSWGVDSFSSVRYNPVEPDLLASCASDRSIVLYDTRESAPLRKVIMQLRSNTLCWNPMEAYYFTCANEDYNLYTYDIRNLDVPVTVHMDHVSAVLDVDYSPTGREFVSASFDKTIRIFPKDKGHSREVYHTKRMQHVICVKWSADSKFIMSGSDE 346          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_HUMAN (DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.628e-61
Identity = 106/199 (53.27%), Postives = 145/199 (72.86%), Query Frame = 3
Query:   60 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            EPL   + K  +  +DH W+  +FAT G QVDIW+  R+ PI S  WG D++ SV+FNP E+ +L + ASDR+I LYD+R ++P +KVI+  ++N+I WNPME   FTAANED N Y++D R LD    VHM H SAV+D+DYSPTG+EFV+ S+D++IRIF  +  RSRE+YHTKRMQ V CVK++ D+ Y++ GSD+
Sbjct:  148 EPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDE 346          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_PONAB (DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.000e-60
Identity = 104/199 (52.26%), Postives = 144/199 (72.36%), Query Frame = 3
Query:   60 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            EPL   + K  +  +DH W+  +FAT G QVDIW+  R+ P+ S  WG D++ SV+FNP E+ +L + ASDR+I LYD+R ++P +KVI+  ++N+I WNPME   FTAANED N Y++D   LD    VHM H SAV+D+DYSPTG+EFV+ S+D++IRIF  +  RSRE+YHTKRMQ V CVK++ D+ Y++ GSD+
Sbjct:  148 EPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPVCSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMSALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDE 346          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_XENTR (DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis GN=dcaf13 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.539e-59
Identity = 101/199 (50.75%), Postives = 141/199 (70.85%), Query Frame = 3
Query:   60 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            EP+   + K  F  +DH     +FAT G QVDIW+  RS P+ S+ WG D++ S++FNP E+++L++  +DRSI LYD R  +P +K+I+  ++N++ WNPME   FTAANE+ N Y+YD R +D    VHM H SAV+D+DYSPTG+EFV+ S+D++IRIF    G SRE+YHTKRMQ V CV++S D  YV+ GSD+
Sbjct:  148 EPIRTILGKTVFTGIDHHMNDAIFATCGQQVDIWDEQRSAPMRSYAWGVDSISSIKFNPIETHILSSCGTDRSIVLYDKRKPTPLKKIILEMRTNTLCWNPMEAFIFTAANENFNLYTYDMRYMDGPVKVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVQSGHSREVYHTKRMQHVTCVRWSADNKYVLCGSDE 346          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_XENLA (DDB1- and CUL4-associated factor 13 OS=Xenopus laevis GN=dcaf13 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 102/199 (51.26%), Postives = 141/199 (70.85%), Query Frame = 3
Query:   60 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            EP+   + K  F  +DH  +  +FAT G QVDIW+  RS P+ S+ WG D++ SVRFNP E+++L++  +DRSI LYD R  +P +K+I+  ++N++ WNPME   FTAANE+ N Y+YD R +D    VHM H SAV+D+DYSPTG+E V+ S+D++IRIF    G SRE+YHTKRMQ V CV++S D  YV+ GSD+
Sbjct:  148 EPMRTILGKTVFTGIDHHVKDAVFATCGQQVDIWDEQRSAPMRSYAWGVDSISSVRFNPVETHILSSCGTDRSIVLYDKRKPTPLKKIILEMRTNALCWNPMEAFIFTAANENFNLYTYDMRYMDSPVKVHMDHVSAVLDVDYSPTGKELVSASFDKSIRIFPVQSGHSREVYHTKRMQHVTCVRWSADNKYVLCGSDE 346          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_CHICK (DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.657e-59
Identity = 101/199 (50.75%), Postives = 143/199 (71.86%), Query Frame = 3
Query:   60 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            EP+   + K  +  +DH W+  +FAT G QVDIW+  R+ P+ S  WG D++ SV+FNP E+ +L + ASDR+I LYD+R S+P +KVI+  ++N++ WNPME   FTAANED N Y++D R L     VHM H SAV+D+DYSPTG+EFV+ S+D+++RIF  + G SRE+YHTKRMQ V  VK++ D+ Y++ GSD+
Sbjct:  148 EPIHTILGKTVYTGIDHHWKDAVFATCGQQVDIWDEQRTSPMCSLTWGFDSISSVKFNPIETYLLGSCASDRNIVLYDMRQSTPLKKVILNMRTNTLCWNPMEAFIFTAANEDYNLYTFDMRFLTSPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSVRIFPVDKGHSREVYHTKRMQHVITVKWTSDSRYILCGSDE 346          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_SCHPO (Protein sof1 OS=Schizosaccharomyces pombe GN=sof1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.646e-58
Identity = 107/194 (55.15%), Postives = 137/194 (70.62%), Query Frame = 3
Query:   75 YVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            Y+  +S   +D    GDLFAT+G  V IW+++R  P+  F+WG DT+  V+FN  E++VLA+   DRSI +YDLR SSP  K+I + ++NSISWNPME  NF A +ED N Y YD R L  A  V+  H SAVM +D+SPTG+EFV+GSYD+TIRI+    G SR++YHTKRMQRV  VKFS DA Y+ SGSDD
Sbjct:  144 YLGDSSLLDIDTSKGGDLFATSGENVSIWDYSRDTPVTKFEWGADTLPVVKFNYTETSVLASAGMDRSIVIYDLRTSSPLTKLITKLRTNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKRALHVYKDHVSAVMSVDFSPTGQEFVSGSYDKTIRIYNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFSGSDD 337          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_YEAST (Protein SOF1 OS=Saccharomyces cerevisiae GN=SOF1 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.377e-57
Identity = 101/191 (52.88%), Postives = 136/191 (71.20%), Query Frame = 3
Query:   84 KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            +++F  +D   E   FAT GA++ +W+ NR +P++   WG D + S++FN  E+++LA+T SD SI LYDLR +SP +K++   ++N+I WNPME  NF  ANED N Y YD R L  +  V   H SAVMD+D+SPTG E VTGSYD++IRI++ N G SREIYHTKRMQ VF VK+S D+ Y+ISGSDD
Sbjct:  179 ESAFQGIDSHRENSTFATGGAKIHLWDVNRLKPVSDLSWGADNITSLKFNQNETDILASTGSDNSIVLYDLRTNSPTQKIVQTMRTNAICWNPMEAFNFVTANEDHNAYYYDMRNLSRSLNVFKDHVSAVMDVDFSPTGDEIVTGSYDKSIRIYKTNHGHSREIYHTKRMQHVFQVKYSMDSKYIISGSDD 369          
BLAST of DR908358 vs. ExPASy Swiss-Prot
Match: DCA13_DICDI (DDB1- and CUL4-associated factor 13 OS=Dictyostelium discoideum GN=wdsof1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.012e-56
Identity = 102/200 (51.00%), Postives = 139/200 (69.50%), Query Frame = 3
Query:   60 EPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAESNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 656
            E +++Y  KN+F ++DHQ     FAT+G   V+IW H RS PI + QWG  T+  V+FNP E+++LA+  +DR I LYD+R +SPA+K+    +SNSI+W P E      ANED N Y YD R L +A  VH  H  +V+DIDYSPTGRE V+GSYD+TIRIF  +  +SRE+Y+T RMQR+F V F+ D+ +++SGSDD
Sbjct:  148 EVISIYNGKNAFTSIDHQLNSTTFATSGPTSVEIWKHQRSTPIQTLQWGHSTITKVKFNPIETHLLASCTTDRDIILYDIRENSPAQKLTTSMRSNSIAWCPTESFTLAIANEDENVYQYDIRNLSKAMTVHRDHVGSVLDIDYSPTGREIVSGSYDKTIRIFPVDSYKSREVYYTNRMQRIFSVLFTADSRFILSGSDD 347          
The following BLAST results are available for this feature:
BLAST of DR908358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DCA13_MOUSE1.102e-6253.27DDB1- and CUL4-associated factor 13 OS=Mus musculu... [more]
DCA13_DANRE3.205e-6256.28DDB1- and CUL4-associated factor 13 OS=Danio rerio... [more]
DCA13_HUMAN4.628e-6153.27DDB1- and CUL4-associated factor 13 OS=Homo sapien... [more]
DCA13_PONAB3.000e-6052.26DDB1- and CUL4-associated factor 13 OS=Pongo abeli... [more]
DCA13_XENTR2.539e-5950.75DDB1- and CUL4-associated factor 13 OS=Xenopus tro... [more]
DCA13_XENLA3.317e-5951.26DDB1- and CUL4-associated factor 13 OS=Xenopus lae... [more]
DCA13_CHICK5.657e-5950.75DDB1- and CUL4-associated factor 13 OS=Gallus gall... [more]
DCA13_SCHPO1.646e-5855.15Protein sof1 OS=Schizosaccharomyces pombe GN=sof1 ... [more]
DCA13_YEAST2.377e-5752.88Protein SOF1 OS=Saccharomyces cerevisiae GN=SOF1 P... [more]
DCA13_DICDI2.012e-5651.00DDB1- and CUL4-associated factor 13 OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16486 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908358 ID=DR908358; Name=DR908358; organism=Citrus sinensis; type=EST; length=658bp
TCTGGAATGTCCCTGTTGCTACTCTTACTGATTCAGATGACTCAACTGAT
AATTCATCTGAGCCTCTGGCCGTTTATGTTTGGAAGAATTCATTCTGGGC
TGTTGATCACCAATGGGAAGGTGATCTGTTTGCCACAGCTGGTGCTCAAG
TTGATATATGGAATCACAATAGGTCTCAGCCTATCAACAGCTTTCAGTGG
GGAACAGATACAGTAATATCTGTTAGATTTAATCCGGCAGAATCAAATGT
CTTAGCAACAACAGCTAGTGATCGAAGCATCACACTATATGATTTGCGCA
TGTCATCCCCAGCAAGGAAGGTTATCATGAGGACAAAATCCAATTCTATT
TCTTGGAACCCAATGGAGCCTATGAACTTTACAGCTGCAAATGAGGATTG
CAATTGTTATAGTTATGACTCTAGAAAGCTAGATGAAGCTAAGTGTGTAC
ACATGGGTCATGAATCTGCAGTGATGGATATTGATTATTCACCTACTGGT
CGGGAATTTGTTACTGGATCTTATGATCGAACAATTAGAATTTTCCAGTA
CAATGGAGGTCGAAGCAGGGAAATCTATCATACAAAAAGAATGCAAAGGG
TGTTTTGTGTCAAGTTTAGCTGTGATGCAAGTTATGTTATCTCAGGAAGT
GATGATAC
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