DR908357

Overview
NameDR908357
Unique NameDR908357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6342 contig Csv1_Contig6342:1..578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908357 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.296e-68
Identity = 117/147 (79.59%), Postives = 126/147 (85.71%), Query Frame = 2
Query:  137 PPPAKRKRNLPGNPDPTAEVIALSPNSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYKCDCGTIFSR 577
            PP  K+KRNLPGNPDP AEVIALSP +LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWKL+QR++ E+RKRVYVCPE SCVHH+P RALGDLTGIKKHF RKHG            YAVQSDWKAHSKTCGT+EY+CDCGTIFSR
Sbjct:   37 PPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 183          
BLAST of DR908357 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.331e-67
Identity = 114/147 (77.55%), Postives = 126/147 (85.71%), Query Frame = 2
Query:  137 PPPAKRKRNLPGNPDPTAEVIALSPNSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYKCDCGTIFSR 577
            PP  K+KRNLPGNPDP AEVIALSP +LMATNRFLCE+C KGFQRDQNLQLHRRGHNLPWKL+QR++ E+RKRVYVCPE +CVHH+ +RALGDLTGIKKHF RKHG            YAVQSDWKAHSKTCGT+EY+CDCGTIFSR
Sbjct:   33 PPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 179          
BLAST of DR908357 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.195e-62
Identity = 108/145 (74.48%), Postives = 123/145 (84.83%), Query Frame = 2
Query:  146 AKRKRNLPGNPDPTAEVIALSPNSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTE-IRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYKCDCGTIFSR 577
            AK+KRN PG PDP A+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QRS  E I+K+VY+CP  +CVHH+ +RALGDLTGIKKH+SRKHG            YAVQSDWKAH+KTCGT+EYKCDCGT+FSR
Sbjct:   52 AKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196          
BLAST of DR908357 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 44/148 (29.73%), Postives = 65/148 (43.92%), Query Frame = 2
Query:  176 PDPTAEVIALSPNSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRV----------YVCPEPSC---VHHNPARALGDLTGIKKHFSRKH-GXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYKCDCGTIFSR 577
            P  + E++ L    ++A +   C IC KGF+RD NL++H RGH   +K         ++ V          Y CP   C     H   + L  +  +K H+ R H              ++V +D K H K CG  ++ C CGT FSR
Sbjct:  224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSR 371          
BLAST of DR908357 vs. ExPASy Swiss-Prot
Match: TT1_ARATH (Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 40/126 (31.75%), Postives = 55/126 (43.65%), Query Frame = 2
Query:  218 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTTEIRKRV------YVCPEPSCVH--HNPARALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTKEYKCDCGTIF 571
            L+    F C +C K F R  NLQ+H  GH   ++    S    + R       Y C E    H  H  ++ L D   ++ H+ RKHG             AV+ DW+ H K CG K + C CG+ F
Sbjct:  139 LIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCG-KRWVCVCGSDF 263          
The following BLAST results are available for this feature:
BLAST of DR908357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MGP_ARATH2.296e-6879.59Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH4.331e-6777.55Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
JKD_ARATH4.195e-6274.48Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
STOP1_ARATH9.476e-1429.73Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
TT1_ARATH1.976e-1131.75Protein TRANSPARENT TESTA 1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16485 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908357 ID=DR908357; Name=DR908357; organism=Citrus sinensis; type=EST; length=578bp
AGAAGAAGTTCATCAACAACAAGAACAACAACAAGGGCTAGTGAGTCAGT
TTCTTGTTACAAATTCTTTGGCTTCAAGTACTACCACGGCAACTAATAAC
AGCAGCAGCAATGGCTCTAGTAGTACTACTCAGCCTCCTCCACCAGCTAA
AAGAAAAAGAAATTTACCAGGAAATCCAGACCCAACAGCTGAAGTTATCG
CTCTCTCACCAAACTCACTCATGGCAACAAACCGTTTCCTCTGTGAAATC
TGCAACAAGGGATTCCAAAGGGACCAAAACTTGCAGCTGCATCGACGAGG
CCACAACCTGCCATGGAAGCTGAGGCAAAGATCAACCACTGAGATCAGAA
AGAGAGTTTACGTCTGCCCAGAACCCTCATGTGTTCACCACAACCCGGCT
CGTGCACTGGGTGATCTGACGGGCATCAAGAAGCACTTTTCCAGGAAGCA
CGGTGAGAAAAAGTGGAAATGTGAGAAGTGCTCTAAGAAGTATGCTGTGC
AGTCTGATTGGAAAGCTCATTCTAAAACCTGTGGGACTAAGGAGTACAAA
TGTGACTGTGGCACCATCTTTTCCAGAA
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