DR908353

Overview
NameDR908353
Unique NameDR908353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:172..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 8.733e-90
Identity = 154/192 (80.21%), Postives = 172/192 (89.58%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIR--QDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFHP 570
            GQVADNLPPP+ T KLLQSTSIQK+RLYGADPAIIKALA TGVGIVIGA++GD+P+LASDPNAATQWINSNVLPFYPASKI+LITVGNE+++SND NL++QLLPAM N+Q AL A SLGGKIKVSTV++M+VL  SDPPSSGSF    Q  ++GILQFL D GSPF INPYPFFAYQSDPRPETLAFCLF P
Sbjct:   31 GQVADNLPPPSETVKLLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAGYQTGLKGILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLFEP 222          

HSP 2 Score: 40.4318 bits (93), Expect = 8.733e-90
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  590 RDGIKYMNMFDAQVDAVHSALNA 658
            + GIKY NMFDAQVDAVHSAL +
Sbjct:  230 KTGIKYTNMFDAQVDAVHSALKS 252          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.206e-42
Identity = 85/199 (42.71%), Postives = 122/199 (61.31%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFHPTRDELTP 591
            GQ+ DNLP P     L++S    K++LY A+P I+KA +NTG+  +IG  +  +  +  DP+ A  WI  NV PF PA+ I  IT+GNE++  ND +L + LLPAM  + +AL  A L  +I V+T H++S+L  S PPS+G F     D++  IL+F +   SPF IN YPFFAY+ +P+   L F LF P +  + P
Sbjct:   34 GQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKM-KDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLDSLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQPNQGIVDP 231          

HSP 2 Score: 27.335 bits (59), Expect = 1.206e-42
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  596 GIKYMNMFDAQVDAVHSALNA 658
            G  Y NM  AQ+DAV+SAL A
Sbjct:  234 GFHYDNMLFAQIDAVYSALAA 254          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.753e-38
Identity = 75/208 (36.06%), Postives = 132/208 (63.46%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDT--MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFHPTRDELTPGRDQVHEHV 618
            G+ ADNLP P   ++L+Q  +I+ +R+Y A+  ++KA ANTG+ ++IG  + D+ A A   +    W+++N+LP+YP++KI  I+VG EV  + D N    +LPAM N+  AL  + L  KIK+S+ H++++L++S PPSS SF ++ +  ++ +L+FL ++ SPF I+ YP++AY+       L + LF  +   + P    ++ ++
Sbjct:   32 GRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPD-NATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASFSKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFESSSQVVDPATGLLYSNM 238          

HSP 2 Score: 31.5722 bits (70), Expect = 4.753e-38
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  596 GIKYMNMFDAQVDAVHSALNA 658
            G+ Y NMFDAQ+DA++ AL A
Sbjct:  232 GLLYSNMFDAQLDAIYFALTA 252          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.227e-35
Identity = 70/208 (33.65%), Postives = 124/208 (59.62%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDT--MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFHPTRDELTPGRDQVHEHV 618
            G+ AD+LP P+   +L+Q  +I+ +R+Y  +  ++KA  NT + ++IG  + D+ A +   +    W+ ++VLP+YP +KI  ITVG E       N  S ++PAM N+  AL    L  +IKVST  ++ +L++S PPS+G+F       +R +L+FL ++ SPF I+ YP++AY+  P   +L + LF  + + + P    +++++
Sbjct:   31 GRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAYFLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSSEVIDPNTGLLYKNM 238          

HSP 2 Score: 31.9574 bits (71), Expect = 1.227e-35
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  596 GIKYMNMFDAQVDAVHSALNA 658
            G+ Y NMFDAQVDA++ AL A
Sbjct:  232 GLLYKNMFDAQVDALYYALTA 252          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.228e-35
Identity = 82/198 (41.41%), Postives = 118/198 (59.60%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQS-TSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDP---NAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDP-PSSGSF---IRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFHP 570
            G  ADNLP P + A  L + T+I +++L+ A+P  I A A T + + +   +  +PALA      +AA  WI +N+ P+ PA+ + L+  GNE+++S D NLI  LLPAM  +  AL A  L G ++V+T H + +LA SD  PS+ SF           +LQF +D GSPF +NPYP+F+Y    RPETL + LF P
Sbjct:   31 GANADNLPSPTSVATFLATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGLTG-VRVTTPHYLGILAPSDGIPSNASFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSY----RPETLNYALFRP 223          

HSP 2 Score: 24.6386 bits (52), Expect = 1.228e-35
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  599 IKYMNMFDAQVDAVHSAL 652
            + Y +M DAQ+DA+++A+
Sbjct:  234 LNYTSMLDAQMDAIYTAM 251          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.326e-35
Identity = 83/200 (41.50%), Postives = 115/200 (57.50%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFHPTRDELTPG 594
            GQVA+NLPPP     LL+S    K++LY ADP  ++A A +G  + + A   +  A  SDP  A  W+  NV  + P +KI+ I VGNEV+ SN   L + L PAM ++  AL    L  +I V+T H++++L  S PPS+ SF R    ++  IL F    GSP  IN YPFFAY+ +P+  +L F LF P +    PG
Sbjct:   32 GQVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTV-ALGNEYLAQMSDPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLLGSLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQPNQGFTDPG 230          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.264e-34
Identity = 75/208 (36.06%), Postives = 123/208 (59.13%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFHPTRDELTPGRDQVHEHV 618
            GQ+A+NLP PA  A LL+S +I +++LY ADP ++ + +N+ V  +IG  +  +  +++DP  A  W+   + P    ++I  I VGNE+  +ND  LI  LLPAM ++  AL    L  ++ V++ H++ +L+ S PPSSGSF  +    ++ +L F     SPF IN YPFFAY+  P+   L + LF P +  + P  +  ++++
Sbjct:   34 GQIANNLPSPARVAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQYLQPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQPNQGMVDPNTNLHYDNM 241          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.914e-31
Identity = 71/192 (36.98%), Postives = 118/192 (61.46%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLF 564
            G + +NLPP +   +L +S +I+++RLY  + A ++AL  + + +++G  + D+  +A++P+ A  W+  NV  F+PA K   I VGNEV  ++   +L   LLPAM N++NA+++A L   IKVS+   M+++  S PPS GSF R D    +  I+ F++   SP  +N YP+F+Y  +PR  +L + LF
Sbjct:   38 GMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSF-RNDVRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALF 228          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.754e-30
Identity = 69/190 (36.32%), Postives = 105/190 (55.26%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFHP 570
            G + +NLP  +   +L +S  I  +R+Y AD   + AL N+G+G+++   +  +  +A+  + A  W+ +NV P+YPA  I  I  GNEV     Q+    +LPAM N+  AL+AA LG  IKVST      +A S PPS+G F +   M  + + L   G+P   N YP+FAY+ +P   +L +  F P
Sbjct:   34 GVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQS----ILPAMRNLNAALSAAGLGA-IKVSTSIRFDEVANSFPPSAGVF-KNAYMTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQP 217          

HSP 2 Score: 28.4906 bits (62), Expect = 8.754e-30
Identity = 11/20 (55.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  593 DGIKYMNMFDAQVDAVHSAL 652
            +G+ Y ++FDA VDAV++AL
Sbjct:  226 NGLTYTSLFDAMVDAVYAAL 245          
BLAST of DR908353 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.727e-29
Identity = 71/192 (36.98%), Postives = 114/192 (59.38%), Query Frame = 1
Query:    1 GQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQ-LLPAMTNMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLF 564
            G + +NLP       L +S +I+++RLY  + A ++AL N+G+ +++G  + D+  LA++ + A QW+  NVL F+P+ KI  I VGNEV      +  +Q +LPA+ N+  A+ A  L  +IKVST   M+++  S PPS GSF R D    +  I+ +L    +P  +N YP+F+Y  +PR  +L + LF
Sbjct:    7 GMMGNNLPSANEVINLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSF-RGDVRSYLDPIIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYALF 197          
The following BLAST results are available for this feature:
BLAST of DR908353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E137_ARATH8.733e-9080.21Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E1311_ARATH1.206e-4242.71Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1312_ARATH4.753e-3836.06Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1313_ARATH1.227e-3533.65Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E13B_WHEAT1.228e-3541.41Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E1310_ARATH3.326e-3541.50Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E1314_ARATH1.264e-3436.06Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
GUB_NICPL2.914e-3136.98Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13B_HORVU8.754e-3036.32Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13B_PHAVU2.727e-2936.98Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16481 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-43_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908353 ID=DR908353; Name=DR908353; organism=Citrus sinensis; type=EST; length=659bp
GGCCAAGTAGCGGATAACCTGCCCCCGCCGGCGGCTACAGCGAAGCTTCT
GCAATCGACTTCTATACAGAAATTGAGGCTCTACGGTGCAGATCCGGCCA
TCATCAAAGCACTAGCAAACACTGGGGTCGGTATTGTAATTGGCGCTTCC
AGTGGAGATATTCCGGCTCTCGCTTCTGATCCCAACGCCGCTACTCAGTG
GATCAACTCAAACGTGTTGCCTTTTTACCCCGCCAGCAAAATCATTCTCA
TCACCGTTGGGAATGAGGTGATGATATCAAACGACCAAAATCTAATCAGT
CAGCTTCTCCCGGCAATGACAAATATGCAAAACGCTCTCAACGCGGCCTC
ACTGGGTGGGAAAATTAAGGTGTCAACGGTTCATGCGATGTCCGTGTTGG
CACAATCCGACCCGCCGTCCTCCGGGTCATTCATCCGCCAAGACACTATG
AGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTTACCATCAA
CCCGTACCCGTTTTTCGCTTACCAAAGCGACCCGAGACCCGAGACTCTTG
CCTTCTGTTTGTTTCACCCAACGCGGGACGAGTTGACTCCGGGACGGGAT
CAAGTACATGAACATGTTCGACGCCCAGGTTGATGCCGTACATTCAGCCT
TGAATGCAA
back to top