DR908351 | Citrus Genome Database

Overview


Name	DR908351
Unique Name	DR908351
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	659

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig186	contig	Csv1_Contig186:217..874.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: HSP7S_PEA (Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.332e-65
Identity = 122/151 (80.79%), Postives = 131/151 (86.75%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            GSFRLDGIPPAPRGVPQIEVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP DEV+RMV EAERF+KEDKEKR+AIDTKNQADSVVYQTEKQLKELG+KVPA              +AI  GSTQ +KD +AALNQEVMQLGQSLYNQ
Sbjct:  516 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAIDKGTGKKQDITITGASTLPGDEVERMVSEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGEKVPAPVKEKVEAKLGELKEAITGGSTQTIKDALAALNQEVMQLGQSLYNQ 666

HSP 2 Score: 28.4906 bits (62), Expect = 9.332e-65
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  541 GDVIDADFTDSK 576
            GDVIDADFTDSK
Sbjct:  695 GDVIDADFTDSK 706

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: HSP7S_SPIOL (Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) OS=Spinacia oleracea GN=CHSP70 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.444e-62
Identity = 121/151 (80.13%), Postives = 129/151 (85.43%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            GSFRLDGIPPAPRGVPQ+EVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP DEV+RMV EAE+FAKEDKEKR+ IDTKNQADSVVYQTEKQLKELG+KVP               DAI  G TQA+KD MAALNQEVMQLGQSLYNQ
Sbjct:  396 GSFRLDGIPPAPRGVPQVEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPGDEVERMVSEAEKFAKEDKEKREVIDTKNQADSVVYQTEKQLKELGEKVPVPVKEKVEAKLGELKDAINGGETQAIKDAMAALNQEVMQLGQSLYNQ 546

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNY3 (Chaperone protein dnaK2 OS=Synechocystis sp. (strain PCC 6803) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.392e-43
Identity = 88/151 (58.28%), Postives = 109/151 (72.19%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            G+FRLDGIPPAPRGVPQIEV FDIDANGIL+V+A D+GTGK+Q I+ITGASTLP+ EV RMV+EAE  A  DKE+R+ ID KNQADS+VYQ EKQ+ ELGDKVPA              +A+A+     ++  M  L Q +  +G ++Y Q
Sbjct:  450 GTFRLDGIPPAPRGVPQIEVTFDIDANGILNVTAKDRGTGKEQSISITGASTLPDTEVDRMVKEAESNAAADKERREKIDRKNQADSLVYQAEKQITELGDKVPAADKIKAEGLIKDLKEAVAQEDDAKIQTVMPELQQVLYSIGSNMYQQ 600

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: DNAK_GUITH (Chaperone protein dnaK OS=Guillardia theta GN=dnaK PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.261e-42
Identity = 91/151 (60.26%), Postives = 109/151 (72.19%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            G+FRLDGI PAPRGVPQIEV FDIDANGILSV+A DKGTGK+Q ITITGASTLP+DEV+RMV EA+  AKEDKEKRD ID KNQ+DS+ YQ+EKQLKEL  K+                +AI   +   M+D  + L   +M LG+S+Y +
Sbjct:  450 GTFRLDGILPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITITGASTLPSDEVERMVNEAQNSAKEDKEKRDKIDLKNQSDSLCYQSEKQLKELEGKIDDTNKNKISSMISELRNAINNENYDEMRDLNSKLQTALMDLGKSVYEK 600

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMP (Chaperone protein dnaK2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 5.825e-42
Identity = 88/151 (58.28%), Postives = 110/151 (72.85%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            G+FRLDGIP APRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGASTL ++EV +MV++AE  A  DKEKR+ ID KNQA+++VYQTEKQL ELGDKV A              +A ++   +AMK  +  L QE+  +G S+Y Q
Sbjct:  449 GTFRLDGIPSAPRGVPQIEVTFDIDANGILSVTAKDKGSGKEQSISITGASTLSDNEVDKMVKDAESNASVDKEKREKIDLKNQAETLVYQTEKQLGELGDKVDASAKAKVEEKSKALKEATSKEDYEAMKKLLEELQQELYAIGSSVYQQ 599

HSP 2 Score: 23.483 bits (49), Expect = 5.825e-42
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1

Query:  544 DVIDADFTDSK 576
            DVIDADFT++K
Sbjct:  623 DVIDADFTETK 633

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: DNAK2_ANASP (Chaperone protein dnaK2 OS=Anabaena sp. (strain PCC 7120) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.289e-41
Identity = 84/151 (55.63%), Postives = 107/151 (70.86%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            G+FRLDGIPPAPRGVPQIEV FDIDANGIL+V+A DKGTGK+Q I+ITGASTL   ++ RMV+EAE+ A  DKE+R+ I+ KNQADS+ YQ EKQL+ELGDKVP               +A+A+   + +K     L Q +  +G ++Y Q
Sbjct:  449 GTFRLDGIPPAPRGVPQIEVVFDIDANGILNVTAKDKGTGKEQSISITGASTLDKTDIDRMVREAEQNASSDKERREKIERKNQADSLAYQAEKQLQELGDKVPEADKTKVEGLVKDLREAVAKEDDEQIKKLTPELQQALFAVGSNIYQQ 599

HSP 2 Score: 23.8682 bits (50), Expect = 1.289e-41
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  526 TKDRMGDVIDADFTDSK 576
            + D   DVIDADFT++K
Sbjct:  617 SSDGGDDVIDADFTETK 633

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNPX (Chaperone protein dnaK2 OS=Synechococcus sp. (strain WH8102) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.679e-41
Identity = 88/151 (58.28%), Postives = 107/151 (70.86%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            G+FRLDGIPPAPRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGASTL + EV +MV++AE  A  DKEKR+ ID KNQA+++VYQ EKQ+ ELGDKV A              +AI      AMK  +  L QE+  +G S+Y Q
Sbjct:  449 GTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGSGKEQSISITGASTLSDSEVDKMVKDAEANASADKEKREKIDLKNQAETLVYQAEKQMGELGDKVEADAKAKVDEKRTKLQEAINAEDYDAMKTLLEELQQELYTVGASVYQQ 599

HSP 2 Score: 23.0978 bits (48), Expect = 1.679e-41
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1

Query:  532 DRMGDVIDADFTDSK 576
            D   DVIDA+FT++K
Sbjct:  623 DASDDVIDAEFTETK 637

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMA (Chaperone protein dnaK2 OS=Prochlorococcus marinus GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.679e-41
Identity = 87/151 (57.62%), Postives = 109/151 (72.19%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            G+FRLDGIPP+PRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGASTL ++EV++MV++AE  A  DKEKRD ID KNQA+++VYQTEKQL ELGDKV                +A  +   + MK  +  L +E+  LG S+Y Q
Sbjct:  449 GTFRLDGIPPSPRGVPQIEVTFDIDANGILSVTAKDKGSGKEQSISITGASTLSDNEVEKMVKDAETNATADKEKRDRIDIKNQAETLVYQTEKQLGELGDKVDEEAKAKVEAKRIQLKEATEKDDYETMKTLVEDLQKELYSLGASVYQQ 599

HSP 2 Score: 23.0978 bits (48), Expect = 1.679e-41
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1

Query:  544 DVIDADFTDSK 576
            DVIDA+FT+SK
Sbjct:  623 DVIDAEFTESK 633

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMM (Chaperone protein dnaK2 OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.188e-41
Identity = 88/151 (58.28%), Postives = 107/151 (70.86%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            G+FRLDGIPPAPRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGASTL  +EV++MV++AE  A  DKEKR+ ID KNQA+++VYQ EKQL EL DKV A               AI +    AMK  +  L QE+  +G S+Y Q
Sbjct:  449 GTFRLDGIPPAPRGVPQIEVTFDIDANGILSVNAKDKGSGKEQSISITGASTLSENEVEKMVKDAETNASADKEKRERIDIKNQAETLVYQAEKQLGELADKVDADSKAKVEDKRVKLKAAIEKDDFDAMKSLLEELQQELYTVGASVYQQ 599

HSP 2 Score: 23.0978 bits (48), Expect = 2.188e-41
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1

Query:  544 DVIDADFTDSK 576
            DVIDA+FT+SK
Sbjct:  624 DVIDAEFTESK 634

[Close]

BLAST of DR908351 vs. ExPASy Swiss-Prot
Match: DNAK_PROMT (Chaperone protein dnaK OS=Prochlorococcus marinus (strain NATL2A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.851e-41
Identity = 86/151 (56.95%), Postives = 108/151 (71.52%), Query Frame = 3

Query:    3 GSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 455
            G+FRLDGIPPAPRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGASTL ++EV +MV++AE  A  DKEKR+ ID KNQA+++VYQ EKQ+ ELGDKV                +A  +   ++MK  +  L QE+  LG S+Y Q
Sbjct:  449 GTFRLDGIPPAPRGVPQIEVTFDIDANGILSVNAKDKGSGKEQSISITGASTLSDNEVDKMVKDAEMNASADKEKREKIDIKNQAETLVYQAEKQIGELGDKVDEAAKAKVEEKRIKLKEATEKDDYESMKTLVEELQQELYSLGASVYQQ 599

HSP 2 Score: 23.483 bits (49), Expect = 2.851e-41
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 1

Query:  544 DVIDADFTDSK 576
            DVIDADFT++K
Sbjct:  620 DVIDADFTETK 630

The following BLAST results are available for this feature:

BLAST of DR908351 vs. ExPASy Swiss-Prot

BLAST of DR908351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP7S_PEA	9.332e-65	80.79	Stromal 70 kDa heat shock-related protein, chlorop...	[more]
HSP7S_SPIOL	2.444e-62	80.13	Stromal 70 kDa heat shock-related protein, chlorop...	[more]
DNAK2_SYNY3	7.392e-43	58.28	Chaperone protein dnaK2 OS=Synechocystis sp. (stra...	[more]
DNAK_GUITH	1.261e-42	60.26	Chaperone protein dnaK OS=Guillardia theta GN=dnaK...	[more]
DNAK2_PROMP	5.825e-42	58.28	Chaperone protein dnaK2 OS=Prochlorococcus marinus...	[more]
DNAK2_ANASP	1.289e-41	55.63	Chaperone protein dnaK2 OS=Anabaena sp. (strain PC...	[more]
DNAK2_SYNPX	1.679e-41	58.28	Chaperone protein dnaK2 OS=Synechococcus sp. (stra...	[more]
DNAK2_PROMA	1.679e-41	57.62	Chaperone protein dnaK2 OS=Prochlorococcus marinus...	[more]
DNAK2_PROMM	2.188e-41	58.28	Chaperone protein dnaK2 OS=Prochlorococcus marinus...	[more]
DNAK_PROMT	2.851e-41	56.95	Chaperone protein dnaK OS=Prochlorococcus marinus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_16479 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-30_A09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908351 ID=DR908351; Name=DR908351; organism=Citrus sinensis; type=EST; length=659bp
TTGGCAGCTTCCGTCTTGATGGCATCCCTCCAGCACCGCGTGGGGTTCCT
CAAATTGAGGTTAAATTTGACATCGATGCCAATGGTATTCTTTCTGTCTC
TGCTGTTGACAAAGGCACCGGAAAGAAACAAGACATCACCATTACTGGTG
CTAGCACTTTACCCAATGATGAGGTGCAAAGAATGGTGCAAGAAGCTGAG
AGATTTGCCAAGGAGGATAAAGAGAAAAGAGATGCTATTGACACCAAGAA
CCAGGCGGATTCTGTCGTATACCAAACGGAGAAACAGCTGAAGGAGCTGG
GAGACAAGGTTCCAGCCGAAGTGAAGGGGAAGGTCGAAGGAAAACTCAAG
GAGCTCAAGGATGCAATTGCAGAGGGTTCAACCCAAGCAATGAAGGACAC
TATGGCCGCCCTTAACCAAGAAGTTATGCAGCTTGGCCAGTCCCTTTACA
ACCAACCAGGAGCTGGGGCTGCACCTGGCGCTGGACCTACTCCTGGTGCT
GAGGCTGGAGCTTCAGACTCATCCAACAAAGGACAGGATGGGTGATGTCA
TCGATGCAGATTTCACTGACAGCAAGTGAAAATCTGCCTAGGTTTTGTCT
TCCTAATTTATTGGATGTGTATAAGAATTTGATTTTGGCGGGATGTGATA
TAACTTGGG