DR908330

Overview
NameDR908330
Unique NameDR908330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1B_ARATH (Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.201e-74
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            MS++NITNVTVLDNPA F+NPFQFEISYECLT LKDDLEWKLIYVGSAEDETYDQ+LESVLVGPVNVGNYRFVLQAD PDP KIREEDIIGVTVLLLTCSY+ QEF+RVGYYVNNDYDDEQLREEPP K LID+VQRNIL DKPRV
Sbjct:    1 MSSINITNVTVLDNPAPFVNPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQVLESVLVGPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDEQLREEPPTKVLIDKVQRNILTDKPRV 146          

HSP 2 Score: 28.4906 bits (62), Expect = 3.201e-74
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  616 KFPINFHPENNE 651
            KFPINFHPEN +
Sbjct:  148 KFPINFHPENEQ 159          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1A_ARATH (Probable histone chaperone ASF1A OS=Arabidopsis thaliana GN=ASF1A PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.436e-71
Identity = 127/146 (86.99%), Postives = 137/146 (93.84%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            MSA+ ITNV VL NPA F++PFQFEISYECL  LKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFV QADPPDPSKI+EEDIIGVTVLLLTCSY+GQEF+RVGYYVNNDY+DEQL+EEPP K LID+VQRNIL+DKPRV
Sbjct:    1 MSAIKITNVAVLHNPAPFVSPFQFEISYECLNSLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDEQLKEEPPTKVLIDKVQRNILSDKPRV 146          

HSP 2 Score: 24.2534 bits (51), Expect = 5.436e-71
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  616 KFPINFHPENNE 651
            KFPI+FHPE  +
Sbjct:  148 KFPIDFHPEEEQ 159          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1_DROME (Histone chaperone asf1 OS=Drosophila melanogaster GN=asf1 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.113e-53
Identity = 96/146 (65.75%), Postives = 120/146 (82.19%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            M+ V+ITNV VLDNP++F NPFQFE+++EC+  LK+DLEWK+IYVGSAE E +DQ+L+++ VGPV  G + FV QADPPD SKI E D +GVT++LLTCSY GQEFVRVGYYVNNDY D ++RE PP K L +++ RNILA KPRV
Sbjct:    1 MAKVHITNVVVLDNPSSFFNPFQFELTFECIEELKEDLEWKMIYVGSAESEEHDQVLDTIYVGPVPEGRHIFVFQADPPDVSKIPEPDAVGVTIVLLTCSYRGQEFVRVGYYVNNDYADPEMRENPPTKPLFEKLTRNILASKPRV 146          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1B_MOUSE (Histone chaperone ASF1B OS=Mus musculus GN=Asf1b PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.871e-50
Identity = 92/146 (63.01%), Postives = 115/146 (78.77%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            M+ V++ NV VL+NP+ F +PF+FEIS+EC   L DDLEWK+IYVGSAE E +DQ+L+SVLVGPV  G + FV QAD P+PS I E D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y D +LRE PPPK    ++QRNILA  PRV
Sbjct:    1 MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALSDDLEWKIIYVGSAESEEFDQILDSVLVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYPDPELRENPPPKPDFSQLQRNILASNPRV 146          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1_XENTR (Histone chaperone asf1 OS=Xenopus tropicalis GN=asf1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.417e-49
Identity = 93/146 (63.70%), Postives = 112/146 (76.71%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            M+ V I N+ VLDNP  F NPFQFEI++EC+  L DDLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+ S I E D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y D +LRE PP K    ++QRNILA  PRV
Sbjct:    1 MAKVQILNMVVLDNPCPFHNPFQFEITFECIEDLPDDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNSSLIPESDAVGVTVVLITCTYRGQEFIRVGYYVNNEYSDPELRENPPLKPHFGQLQRNILASNPRV 146          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1_CHICK (Histone chaperone ASF1 OS=Gallus gallus GN=ASF1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.417e-49
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +DLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+P  I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y + +LRE PP K    ++QRNILA  PRV
Sbjct:    1 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRV 146          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1A_HUMAN (Histone chaperone ASF1A OS=Homo sapiens GN=ASF1A PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.417e-49
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +DLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+P  I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y + +LRE PP K    ++QRNILA  PRV
Sbjct:    1 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRV 146          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: ASF1A_BOVIN (Histone chaperone ASF1A OS=Bos taurus GN=ASF1A PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.417e-49
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +DLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+P  I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y + +LRE PP K    ++QRNILA  PRV
Sbjct:    1 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRV 146          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: AS1LA_XENLA (Histone chaperone asf1-A OS=Xenopus laevis GN=asf1-A PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.417e-49
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +DLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+P  I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y + +LRE PP K    ++QRNILA  PRV
Sbjct:    1 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRV 146          
BLAST of DR908330 vs. ExPASy Swiss-Prot
Match: AS1LB_XENLA (Histone chaperone asf1-B OS=Xenopus laevis GN=asf1-B PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.417e-49
Identity = 93/146 (63.70%), Postives = 111/146 (76.03%), Query Frame = 2
Query:  176 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKGLIDRVQRNILADKPRV 613
            M+ V I N+ VLDNP  F NPFQFEI++EC+  L DDLEWK+IYVGSAE E YDQ L+SVLVGPV  G + FV QAD P+ S I E D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y D +LRE PP K    ++QRNILA  PRV
Sbjct:    1 MAKVQILNMVVLDNPCPFHNPFQFEITFECIEDLPDDLEWKIIYVGSAESEEYDQTLDSVLVGPVPAGRHMFVFQADAPNCSLIPESDAVGVTVVLITCTYRGQEFIRVGYYVNNEYSDPELRENPPLKAHFGQLQRNILASNPRV 146          
The following BLAST results are available for this feature:
BLAST of DR908330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ASF1B_ARATH3.201e-7489.73Histone chaperone ASF1B OS=Arabidopsis thaliana GN... [more]
ASF1A_ARATH5.436e-7186.99Probable histone chaperone ASF1A OS=Arabidopsis th... [more]
ASF1_DROME2.113e-5365.75Histone chaperone asf1 OS=Drosophila melanogaster ... [more]
ASF1B_MOUSE4.871e-5063.01Histone chaperone ASF1B OS=Mus musculus GN=Asf1b P... [more]
ASF1_XENTR1.417e-4963.70Histone chaperone asf1 OS=Xenopus tropicalis GN=as... [more]
ASF1_CHICK1.417e-4961.64Histone chaperone ASF1 OS=Gallus gallus GN=ASF1 PE... [more]
ASF1A_HUMAN1.417e-4961.64Histone chaperone ASF1A OS=Homo sapiens GN=ASF1A P... [more]
ASF1A_BOVIN1.417e-4961.64Histone chaperone ASF1A OS=Bos taurus GN=ASF1A PE=... [more]
AS1LA_XENLA1.417e-4961.64Histone chaperone asf1-A OS=Xenopus laevis GN=asf1... [more]
AS1LB_XENLA2.417e-4963.70Histone chaperone asf1-B OS=Xenopus laevis GN=asf1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16458 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-18_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908330 ID=DR908330; Name=DR908330; organism=Citrus sinensis; type=EST; length=664bp
TCAACCGTCCTTTGCACCGCCATTTCCCAGTCACCGTTTCTCCTCCTCGA
AGACTCTATTTCGCCTTTCGCCTCTAGCCTCTAGGGTTTCTGATTTCTTC
GATGAAGGATATCGAATCCAGGAATAGAGCCAATCAATCCACGGAATCAT
CAGAATCCTGTTCTAACTCAAGACTATGAGCGCCGTAAATATCACAAACG
TCACCGTTTTAGATAACCCTGCTGCGTTTCTCAATCCGTTTCAGTTCGAA
ATCTCGTACGAGTGTTTGACCCCTCTTAAAGACGACTTGGAATGGAAACT
CATTTATGTGGGATCTGCTGAGGATGAGACTTATGATCAACTGCTAGAAA
GTGTGCTTGTTGGTCCTGTTAATGTTGGTAACTACCGTTTTGTCTTACAG
GCAGACCCTCCGGACCCATCAAAAATCCGTGAAGAGGATATAATTGGTGT
CACTGTACTGCTTTTAACATGTTCTTATATAGGACAGGAATTTGTTCGAG
TGGGGTATTACGTGAACAATGATTATGATGACGAGCAGCTAAGAGAGGAG
CCTCCTCCAAAGGGTTTGATAGATAGAGTTCAAAGAAACATATTAGCTGA
CAAGCCTAGAGTCCAAAGTTCCCAATCAATTTTCATCCTGAGAACAATGA
GCATGGAGAGGACA
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