DR908320

Overview
NameDR908320
Unique NameDR908320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8921 contig Csv1_Contig8921:246..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908320 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 2
Query:    8 PFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTG-DQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGST-----------GYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE------IDSGTIITRFPAPVYSALRSAFV 628
            P F+P  S +FS +PC+S  C+ L           CS+  C Y   Y DGS   G   T+ +T   V+            GC +NN G  Q   +G++G+ RGP+S+ S+ +++ F YC+ +P GS+             +T G P+T          ++ + +   FY+ITL G+SVG  RLP+  S F   S        IDSGT +T F    Y ++R  F+
Sbjct:  135 PIFNPQGSSSFSTLPCSSQLCQAL-------SSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPN------ITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCM-TPIGSSTPSNLLLGSLANSVTAGSPNTT---------LIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFI 336          
BLAST of DR908320 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21
Identity = 67/215 (31.16%), Postives = 107/215 (49.77%), Query Frame = 2
Query:    8 PFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTG-DQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGST--GYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE------IDSGTIITRFPAPVYSALRSAF 625
            P F+P  S +FS +PC S  C+ L         + C++ EC Y   Y DGS   G+ AT+  T +  +            GC ++N G  Q   +G++G+  GP+S+ S+  +  F YC+ S YGS+    +  G   +   +    T ++ +     +Y+ITL GI+VGG+ L + +S F +L  +      IDSGT +T  P   Y+A+  AF
Sbjct:  136 PIFNPQDSSSFSTLPCESQYCQDL-------PSETCNNNECQYTYGYGDGSTTQGYMATETFTFETSSVPN------IAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTS-YGSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTF-QLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAF 335          
BLAST of DR908320 vs. ExPASy Swiss-Prot
Match: ASPL2_ARATH (Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 63/213 (29.58%), Postives = 96/213 (45.07%), Query Frame = 2
Query:   14 FDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCS-SKECPYDIAYVDGSGETGFWATDRMTIQEVNGN---GYFARYPFLLGCTDNNTGDQ-NGAS---GIMGLDRGPVSIISKTNIS-----YFFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSAL 613
            FD + S T  K+ C+   C  + +       D C  +  C Y I Y D S   G +  D +T+++V G+   G   +   + GC  + +G   NG S   G+MG  +   S++S+   +      F +CL +  G  G    G  D+     VK TP+V  P Q   Y++ L G+ V G  L L  S      T +DSGT +  FP  +Y +L
Sbjct:  121 FDMNASSTSKKVGCDDDFCSFISQ------SDSCQPALGCSYHIVYADESTSDGKFIRDMLTLEQVTGDLKTGPLGQ-EVVFGCGSDQSGQLGNGDSAVDGVMGFGQSNTSVLSQLAATGDAKRVFSHCLDNVKGG-GIFAVGVVDSPK---VKTTPMV--PNQMH-YNVMLMGMDVDGTSLDLPRSIVRNGGTIVDSGTTLAYFPKVLYDSL 319          
The following BLAST results are available for this feature:
BLAST of DR908320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NEP1_NEPGR5.075e-2331.56Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR2.785e-2131.16Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
ASPL2_ARATH4.031e-1229.58Aspartic proteinase-like protein 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16448 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908320 ID=DR908320; Name=DR908320; organism=Citrus sinensis; type=EST; length=666bp
AAGGGACCCATTTTTTGATCCATCCAAGTCCAAAACCTTTTCCAAAATCC
CTTGCAACTCCACGACGTGCAAAATTCTCCTTGAATGGTTTCCTCCAAAT
GGTCAAGACAAATGCAGTTCTAAGGAATGCCCGTACGACATCGCATATGT
TGACGGCTCAGGCGAAACCGGCTTTTGGGCAACTGATAGGATGACTATAC
AAGAAGTGAACGGCAATGGGTACTTTGCACGGTACCCTTTTCTTCTGGGT
TGCACCGACAACAACACTGGCGACCAAAACGGAGCATCCGGAATTATGGG
TCTCGACCGAGGTCCGGTATCCATAATTTCAAAAACCAATATAAGCTACT
TCTTTTATTGTCTACATTCGCCATACGGCTCCACAGGCTACATAACTTTT
GGCAAACCTGATACTGTGAACAAGAAGTTCGTGAAATATACTCCAATTGT
CACTACCCCCGAACAGTCTGAATTTTACCATATTACCCTTACTGGAATAA
GTGTCGGTGGGGAAAGACTTCCTTTGAAAGCTTCATATTTTACTAAGTTG
AGTACAGAAATCGACTCGGGCACCATCATCACGAGGTTTCCTGCACCTGT
GTACTCAGCTCTGAGATCAGCATTCGTAAAAGGATGAAGAATATAAGATG
GGAAAAGGAATTGAAG
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