DR908316

Overview
NameDR908316
Unique NameDR908316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:126..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.838e-73
Identity = 131/141 (92.91%), Postives = 139/141 (98.58%), Query Frame = 3
Query:  243 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDS 665
            LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQRPK+SP+KETIR+NLS+LLGADP+VVNLKAKTHEKVDS
Sbjct:   73 LPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDS 213          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.032e-72
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 3
Query:  243 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDS 665
            L FRVGHGFDLHRLEPGYPLIIGGIN+PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLMDEAGYE+GNLDATLILQRPK+SP+KE IR NL +LLGADP VVNLKAKTHEKVDS
Sbjct:   78 LSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDS 218          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme ispD/ispF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.617e-39
Identity = 71/139 (51.08%), Postives = 100/139 (71.94%), Query Frame = 3
Query:  243 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKV 659
            LP RVG GFD+H+LE G  L +GGI + H++G   HSD DV LH +VDA+LGA+G  DIG  FP SDP+WKGA SS FI+ A +L+DEAGY +GN+D T+I + P++ P+++ +   ++ELL   P  +++KA T EK+
Sbjct:  224 LPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAIGKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICEAPRIGPHRDAMGQRIAELLATSPDAISVKATTTEKL 362          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_RALME (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ispF PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.586e-38
Identity = 75/136 (55.15%), Postives = 100/136 (73.53%), Query Frame = 3
Query:  252 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKV 659
            R+G G+D+H L PG  LI+GG+++PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+P+   +  NL+E LG   T  N+KAKT+EK+
Sbjct:    7 RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLGLPVTRCNVKAKTNEKL 142          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_ACIBL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidobacteria bacterium (strain Ellin345) GN=ispF PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.586e-38
Identity = 72/134 (53.73%), Postives = 95/134 (70.90%), Query Frame = 3
Query:  252 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHE 653
            RVG GFD H    G PL IGG+ +PH  G   HSDGDVLLH + DA+LGA+   DIG  FP SDPKWKGA S VFI+EA+R ++ AGY +GN+D +L+L  PK+ P+ + I+ ++++LL  +PT V +KAKT E
Sbjct:    3 RVGLGFDSHEFREGIPLRIGGLTIPHTHGLSGHSDGDVLLHAITDALLGAVAAGDIGAFFPPSDPKWKGANSVVFIEEAMRHIETAGYRVGNVDCSLVLNAPKIGPHAKAIQESVAKLLKIEPTAVGIKAKTPE 136          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_LYSSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.176e-37
Identity = 70/137 (51.09%), Postives = 101/137 (73.72%), Query Frame = 3
Query:  249 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKV 659
            FR+G GFD+H  E G PLIIGGI +PHE+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP +K A S+  ++   +++++ GY +GN+D T++ QRPK++PY E ++  ++ELL A+P+ VN+KA T E++
Sbjct:    2 FRIGQGFDVHAFEEGRPLIIGGITIPHEKGLVGHSDADVLLHTVTDAALGAIGEGDIGRHFPDTDPAFKDADSAKLLEYIWKIVEDKGYILGNVDCTIMAQRPKMAPYIEQMQNRIAELLHAEPSQVNVKATTTERL 138          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_RALEJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ispF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36
Identity = 73/141 (51.77%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  243 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKV 659
            +PF  RVG G+D+H L PG  LI+GG+++PH+RG   HSD D LLH + DA+ GA GL DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DA++I Q+PKL+P+   +  N+++ LG   T  N+KAKT+EK+
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVHIPHDRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDASVIAQQPKLAPHIPGMVANIADDLGLPATRCNVKAKTNEKL 142          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_RALPJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispF PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.065e-36
Identity = 71/139 (51.08%), Postives = 98/139 (70.50%), Query Frame = 3
Query:  243 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKV 659
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + +AGY +GN+DAT+I Q+PKL+P+   +  NL+E LG  P   N+KAKT+EK+
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVHKAGYAVGNVDATVIAQKPKLAPHVPGMVANLAEDLGIAPERCNVKAKTNEKL 142          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_RALSO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia solanacearum GN=ispF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.003e-36
Identity = 71/139 (51.08%), Postives = 98/139 (70.50%), Query Frame = 3
Query:  243 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKV 659
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + EAGY++GN+DAT+I Q+PKL+P+   +  NL+  LG  P   N+KAKT+EK+
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVREAGYDVGNVDATVIAQKPKLAPHVPGMVANLAADLGIAPGRCNVKAKTNEKL 142          
BLAST of DR908316 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter sulfurreducens GN=ispF PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.228e-36
Identity = 69/136 (50.74%), Postives = 98/136 (72.06%), Query Frame = 3
Query:  252 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKV 659
            R+GHG+D+HRL  G  LI+GG+++PHE G   HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S   ++  + L    G+ +GNLDAT++ QRPK++P+   +R +++  L ADP  VN+KA T E++
Sbjct:    2 RIGHGYDVHRLVAGRKLIVGGVDIPHELGLLGHSDADVLLHAISDAILGALALGDIGKHFPDTDPRYKGADSRALLRHVMELATRKGFHLGNLDATIVAQRPKMAPHIPLMREHIAADLMADPDRVNVKATTTEEL 137          
The following BLAST results are available for this feature:
BLAST of DR908316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_ARATH1.838e-7392.912-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CATRO2.032e-7291.492-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_ERYLH8.617e-3951.08Bifunctional enzyme ispD/ispF OS=Erythrobacter lit... [more]
ISPF_RALME5.586e-3855.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACIBL5.586e-3853.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LYSSC6.176e-3751.092-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALEJ1.797e-3651.772-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALPJ3.065e-3651.082-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALSO4.003e-3651.082-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOSL5.228e-3650.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16444 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908316 ID=DR908316; Name=DR908316; organism=Citrus sinensis; type=EST; length=667bp
AAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCT
CTCCACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTT
GAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGT
CGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTT
AAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTT
TCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTC
TGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCAC
TCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGC
ATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGT
GGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATG
GATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCA
AAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTG
AACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAAAGCGAAAACTCAT
GAAAAAGTTGATAGCCT
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