DR908312

Overview
NameDR908312
Unique NameDR908312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908312_ssr136 microsatellite DR908312_ssr136:136..147. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1627 contig Csv1_Contig1627:27..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.005e-71
Identity = 121/166 (72.89%), Postives = 139/166 (83.73%), Query Frame = 3
Query:  174 FGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLV--ENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFRE 665
            F GT QKC  C+KTVYLVDKL A+ RVYHKACFRCHHC  TLKLSNFNSF+GV+YCR HFDQLFKRTGSLEKSF+GTPK  KPE+    E ++A ++S+ F GTRDKC  C + VYP E+V V+G AYHR+CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLF++
Sbjct:    4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKK 168          

HSP 2 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  153 AAAMASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRD 485
            A  ++S F GT+ KC AC K VY ++++  D   YH+ACF+C H   T+  SN+ + EG LYC+ H  QLFK+ G+  +           E   +N   Q    +   T++
Sbjct:   96 ANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESETQNTETQNAETQNADTQN 206          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.252e-20
Identity = 54/172 (31.40%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC ACDKTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +P   KP +     N  K S KF G  +KC  C ++VY  EKV   G  +H++CF C+  G ++  +N    +G+LYCK
Sbjct:    2 PNWGGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSP---KPARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFPCAICGKSLESTNVTDKDGELYCK 169          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 53/172 (30.81%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P +     N  K S KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPK---PARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 53/172 (30.81%), Postives = 84/172 (48.84%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P + V   N  K + KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK---PARSVTTSNPSKFTAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP2_HUMAN (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+ V+P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCK 168          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP2_BOVIN (Cysteine and glycine-rich protein 2 OS=Bos taurus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+ V+P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCK 168          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP2_RAT (Cysteine and glycine-rich protein 2 OS=Rattus norvegicus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 47/168 (27.98%), Postives = 79/168 (47.02%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+  +P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKY-GGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCK 168          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP2_MOUSE (Cysteine and glycine-rich protein 2 OS=Mus musculus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 47/168 (27.98%), Postives = 79/168 (47.02%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+  +P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCK 168          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP3_BOVIN (Cysteine and glycine-rich protein 3 OS=Bos taurus GN=CSRP3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 51/172 (29.65%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK  +      + N  K + KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK--QARSATTSSNPSKFA-KF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of DR908312 vs. ExPASy Swiss-Prot
Match: CSRP2_COTJA (Cysteine and glycine-rich protein 2 OS=Coturnix coturnix japonica GN=CSRP2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 3
Query:  171 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 638
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT  + + E+L               N N  K + KF G  +KC  C  +VY  EKV   G  +H++CF+C+  G ++  +     EG++YCK
Sbjct:    2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCK 169          
The following BLAST results are available for this feature:
BLAST of DR908312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SF3_HELAN5.005e-7172.89Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
CSRP3_RAT5.252e-2031.40Cysteine and glycine-rich protein 3 OS=Rattus norv... [more]
CSRP3_MOUSE6.860e-2030.81Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
CSRP3_HUMAN6.860e-2030.81Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
CSRP2_HUMAN2.882e-1828.57Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
CSRP2_BOVIN2.882e-1828.57Cysteine and glycine-rich protein 2 OS=Bos taurus ... [more]
CSRP2_RAT4.916e-1827.98Cysteine and glycine-rich protein 2 OS=Rattus norv... [more]
CSRP2_MOUSE8.385e-1827.98Cysteine and glycine-rich protein 2 OS=Mus musculu... [more]
CSRP3_BOVIN1.095e-1729.65Cysteine and glycine-rich protein 3 OS=Bos taurus ... [more]
CSRP2_COTJA3.186e-1728.99Cysteine and glycine-rich protein 2 OS=Coturnix co... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16440 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-40_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908312 ID=DR908312; Name=DR908312; organism=Citrus sinensis; type=EST; length=667bp
CTCACATTTTGGTTTCTTTTTTTCTCCTCATTATCATCAATAAAACACAA
AAAAGAAGAAGGCGCTGGAATCAAGAAAAAAAATCACGAAGTTGCTTCTC
TTAATACAATAAATCTGAGGTTCGGTTGGACCGGAAGCTAGCTAGCTAGC
AAGCAGCAGCCATGGCATCACCCTTTGGAGGAACCCAACAAAAATGCATG
GCCTGTGACAAAACTGTGTACCTTGTTGACAAGTTGACGGCCGATAATCG
GGTCTATCACAAAGCTTGCTTCCGGTGCCACCATTGCAAAGGAACCCTCA
AGCTCAGTAACTTCAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCTCAC
TTTGATCAGCTCTTCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGAAGG
AACACCAAAGATTGTGAAACCTGAAAAGCTCGTTGAAAATGAGAATGCAC
AGAAAGTCTCCAACAAGTTTGTGGGCACCAGAGATAAATGTGTGGGATGC
GATAGGACTGTTTATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGCATA
TCATAGGAGCTGCTTCAAGTGCAGCCATGGAGGTTGCACCATCAGCCCAT
CAAATTATATTGCCCATGAGGGGAAACTCTACTGCAAGCATCATCACATA
CAACTCTTCAGGGAGAA
back to top