DR908311

Overview
NameDR908311
Unique NameDR908311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1549 contig Csv1_Contig1549:438..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908311 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.550e-30
Identity = 73/107 (68.22%), Postives = 78/107 (72.90%), Query Frame = -3 
Query:  366 YGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE---GVVDTPAESKGVV----DTPAET 665
            YGPGGPYALFAGKDASRALAKMSFEEKDLT D+SGLGPFEL+ALQDWEYKFMSKY KVG++K      + AS  E TE  E    V  TP   K VV    D PAET
Sbjct:  110 YGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTENVEQDAHVTTTP--GKTVVDKSDDAPAET 214
[Close]
BLAST of DR908311 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  423 YGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE 665
            YGPGGPYALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEYKFMSKYVKVG+I+      DG    ES+EP E
Sbjct:  106 YGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQK----KDGEGK-ESSEPSE 181
[Close]
BLAST of DR908311 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = -3 
Query:  477 YGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKS 665
            YG GG Y++FAGKDASRAL KMS  E+D++  + GL   E+  L DWE KF +KY  VG + S
Sbjct:   38 YGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100
The following BLAST results are available for this feature:
BLAST of DR908311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MSBP1_ARATH9.550e-3068.22Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
MSBP2_ARATH3.072e-2879.01Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
SBP3_ARATH5.264e-1253.97Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16439 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908311 ID=DR908311; Name=DR908311; organism=Citrus sinensis; type=EST; length=667bp
GGCACGAGGGTTTTTTTTTTTTTTTTTTTTTTCCCAACAGAAACTACATA
GTTCCATTATGAATTCCCAAAGTATGATTTGCCCGGTTTTATTTTTCGAC
AAAATTAAGCATTAAAAAACAAGTCTGCGATAGAAGTTTCCTAGACTAAC
AATGTAAACTTACTAATATGTGAAAAAATTCACAAATACACGCAGCCAAA
CAGATGGGGTTTGCCTTATGATTAAATTCTACTCCTCAGCATCATCAACA
GATGGGGTTCGGCTTACTCCTTCTTAGTATCATCAAAAGATGGGGTTGCC
TCAGGTCCAGCGGCTGCAGTTTCTGACGGACCATATTCAGCAGGCTTAGC
GATATCTACTTCTTTAGTTTCTGCAGGTGTATCAACAACTCCTTTACTTT
CTGCAGGTGTATCAACAACTCCTTCTTTAGGCTCAGTGGATTCACCAGAG
GAGGCTCCATCTGTTACTGGAACTGTCGACTTGATAGATCCAACCTTAAC
ATACTTGCTCATGAACTTATACTCCCAGTCCTGCAATGCCTCCAACTCAA
ATGGACCAAGACCAGAGATATCACCAGTTAAATCTTTTTCCTCAAAAGAC
ATCTTGGCAAGGGCCCTGCTAGCATCCTTTCCAGCAAACAACGCATATGG
CCCACCAGGTCCATAAA
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