DR908310

Overview
NameDR908310
Unique NameDR908310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908310_ssr565 microsatellite DR908310_ssr565:565..580. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4567 contig Csv1_Contig4567:1388..2054. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908310 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.525e-59
Identity = 112/167 (67.07%), Postives = 134/167 (80.24%), Query Frame = 1
Query:    1 FDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTV-SSMPSNTNSFAHLEWSDGKYIVGSPIAISW 498
            FDHGAGHV+P +A NPGL+YDLT +DYLGFLCALNYT+ QI S++RR +TCD SK YS+AD NYPSFAVN++      G    KYTR++T+VG  GTY V +TS T  GVKISVEPA L+F +ANEKKSYTVTFTV SS PS +NSF  +EWSDGK++VGSP+AISW
Sbjct:  597 FDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD------GVGAYKYTRTVTSVGGAGTYSVKVTSET-TGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756          
BLAST of DR908310 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 1
Query:    1 FDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAIS 495
            F +G+GHVNP+ A+ PGLVYD    DY+ FLC   Y    +  +      C +     + D NYPSF +++  +Q+ +      + R+LT+V P   TY+  I  S   G+ ISV P  LSF    ++KS+T+  TV          A L WSDG + V SPI I+
Sbjct:  571 FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN----QYFNRTLTSVAPQASTYRAMI--SAPQGLTISVNPNVLSFNGLGDRKSFTL--TVRGSIKGFVVSASLVWSDGVHYVRSPITIT 728          
BLAST of DR908310 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = 1
Query:    1 FDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLA--DFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGP-GVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAI 492
            F +G G +NP  A +PGLVYD+    Y+ FLC   Y A+ +  L   +    +S    L     NYP+  + + +A++   S++  + R +TNVGPP +  V+  +   P GV+I+VEP +LSF++A++K+S+ V      M         L W   ++ V SPI I
Sbjct:  582 FAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKT---STLAVFRRRVTNVGPPSS--VYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743          
The following BLAST results are available for this feature:
BLAST of DR908310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH1.525e-5967.07Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME1.648e-2136.75Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH8.463e-1833.53Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16438 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-18_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908310 ID=DR908310; Name=DR908310; organism=Citrus sinensis; type=EST; length=667bp
TTTGATCATGGTGCTGGACACGTTAATCCAGTATCAGCCCTTAATCCCGG
GTTGGTTTACGATCTAACGGTTGACGATTATCTGGGCTTCCTCTGCGCAT
TAAATTACACCGCGTCACAAATCAACAGCCTTGCTAGAAGGAAATTCACA
TGCGACGCTAGCAAAAGATACAGCCTCGCTGACTTCAATTATCCTTCATT
TGCTGTCAATATTGAAACCGCACAAAGTAGCAGTGGGTCTAGTGTTTTGA
AATACACCCGCTCTCTTACAAACGTGGGCCCACCAGGGACATACAAAGTG
TTTATAACATCATCAACAGGGCCTGGAGTTAAGATTTCAGTTGAGCCAGC
AACGTTGAGTTTCACTCAAGCGAACGAGAAGAAATCATATACGGTGACAT
TCACTGTTAGTTCAATGCCATCAAATACCAACAGCTTTGCTCATCTTGAG
TGGTCAGATGGGAAGTACATTGTTGGAAGTCCCATTGCGATCAGCTGGAA
TTAAATTGTTATCCAGCTAAACAAACGGATTGCTGGGTCTAGTGTTAAAT
TAATGTTGTTCTGTGAGAGAGAGAGAGAGACAGAGTGGAAAACCAAGGAA
TGGGTAGCTATTTTTCTTTCTCAGTGCACAGTGTTATTATTTTATGTTGA
CTACATGTGTATTTGCT
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