DR908306

Overview
NameDR908306
Unique NameDR908306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5667 contig Csv1_Contig5667:492..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908306 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 1.897e-110
Identity = 183/219 (83.56%), Postives = 197/219 (89.95%), Query Frame = 2
Query:    2 HIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCSKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSATLPKECTTVQKCYIELAKQVKANL-------VKLMNTSSSWPTQW 637
            HI+NLLSPSTPFFFNTLYDPYR+G DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP ERNTRFVDA++TIPKG+LFPMCGMNL FNRELIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHLG GVKTGLPYIWHSKASNPFVNLKKEYKGI+WQEE+IPFFQ+ATL K+CT+VQKCYIEL+KQVK  L       +KL +   +W   W
Sbjct:  123 HIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGYGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFIKLADAMVTWVEAW 341          
BLAST of DR908306 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 394.43 bits (1012), Expect = 2.740e-109
Identity = 180/219 (82.19%), Postives = 195/219 (89.04%), Query Frame = 2
Query:    2 HIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCSKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSATLPKECTTVQKCYIELAKQVKANL-------VKLMNTSSSWPTQW 637
            HI+NLL PSTP FFNTLYDPYRDGADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDA+MTIPKGTLFPMCGMNL F+R+LIGPAMYFGLMGDGQPIGRYDDMWAGWC+KVICDHLGLG+KTGLPYIWHSKASNPFVNLKKEY GI+WQEE+IPFFQ+ATLPKECTTVQ+CY+EL+KQVK  L        KL     +W   W
Sbjct:  120 HIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHERNTRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLGLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQAATLPKECTTVQQCYLELSKQVKKKLSSIDPYFTKLGEAMVTWIEAW 338          
BLAST of DR908306 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 3.956e-108
Identity = 180/219 (82.19%), Postives = 194/219 (88.58%), Query Frame = 2
Query:    2 HIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCSKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSATLPKECTTVQKCYIELAKQVKANL-------VKLMNTSSSWPTQW 637
            HI+NLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDA+MTIPKGTLFPMCGMNL F+RELIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEE+IPF QSATLPK+CT+VQ+CY+EL+KQVK  L        KL +   +W   W
Sbjct:  124 HIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFSQSATLPKDCTSVQQCYLELSKQVKEKLSTIDPYFTKLADAMVTWIEAW 342          
BLAST of DR908306 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 383.645 bits (984), Expect = 4.836e-106
Identity = 177/219 (80.82%), Postives = 192/219 (87.67%), Query Frame = 2
Query:    2 HIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCSKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSATLPKECTTVQKCYIELAKQVKANL-------VKLMNTSSSWPTQW 637
            HI+NLLSPSTPFFFNTLYDPYR+GADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQLVKP ERN R+VDA+MTIPKGTLFPMCGMNL F+R+LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL LGVKTGLPYIWHSKASNPFVNLKKEYKGI+WQE++IPFFQ+ T+PK+C TVQKCYI L+ QVK  L       VKL +   +W   W
Sbjct:  130 HIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKPKERNERYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQNVTIPKDCDTVQKCYIYLSGQVKEKLGTIDPYFVKLGDAMVTWIEAW 348          
BLAST of DR908306 vs. ExPASy Swiss-Prot
Match: UPTG_PHODC (Alpha-1,4-glucan-protein synthase [UDP-forming] (Fragments) OS=Phoenix dactylifera PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2
Query:  374 KVICDHLGLGVKTGLPYIWHSKASNPFVNLK 466
            KVICDHLGLGVKTGLPYIWHSKASNPFVNLK
Sbjct:   30 KVICDHLGLGVKTGLPYIWHSKASNPFVNLK 60          
The following BLAST results are available for this feature:
BLAST of DR908306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UPTG_PEA1.897e-11083.56Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU2.740e-10982.19Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG2_SOLTU3.956e-10882.19Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG_MAIZE4.836e-10680.82Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_PHODC6.939e-12100.00Alpha-1,4-glucan-protein synthase [UDP-forming] (F... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16434 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-49_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908306 ID=DR908306; Name=DR908306; organism=Citrus sinensis; type=EST; length=668bp
GCACATAAGGAACCTGCTGAGTCCATCCACCCCATTTTTCTTTAACACTC
TGTACGACCCATACCGTGATGGAGCTGACTTCGTTCGCGGATATCCATTC
AGTCTTCGTGAGGGTGTCCCCACTGCTGTTTCTCATGGCCTCTGGCTCAA
CATCCCAGATTATGATGCTCCCACCCAGCTTGTCAAGCCTCTTGAGAGGA
ACACTAGGTTTGTGGATGCAATTATGACAATACCAAAGGGAACCCTCTTC
CCCATGTGTGGTATGAATCTGGGATTCAACCGTGAATTGATAGGTCCTGC
AATGTACTTCGGACTCATGGGTGATGGCCAGCCAATTGGACGCTATGATG
ACATGTGGGCTGGTTGGTGCTCCAAGGTTATTTGTGATCACTTGGGATTG
GGTGTGAAGACAGGGTTGCCTTACATCTGGCACAGCAAAGCTAGCAACCC
GTTTGTGAATCTCAAGAAGGAATACAAAGGAATCTACTGGCAGGAAGAGC
TGATCCCATTCTTCCAATCTGCCACACTTCCAAAGGAATGCACCACCGTG
CAGAAGTGCTACATTGAACTGGCCAAGCAAGTTAAGGCAAACTTGGTAAA
GTTGATGAATACTTCATCAAGCTGGCCGACGCAATGGTCACATGGATCGA
AGCATGGGATGAACTGAA
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