DR908305

Overview
NameDR908305
Unique NameDR908305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9977 contig Csv1_Contig9977:623..1290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.179e-57
Identity = 107/132 (81.06%), Postives = 120/132 (90.91%), Query Frame = 3
Query:    3 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAYYYQAPP 398
            FYTLRKPVASTINTLAGALY+VF ASPD+AR+EMR ACFDYLSLGGI S GP++LLSGLNPRP+ L LHFFAVAIYGVGR+L+PFPSP R W+GAR+I  ASGIIFPI+K+EGLRQMFFPA VPA YY+APP
Sbjct:  407 FYTLRKPVASTINTLAGALYKVFCASPDKARQEMRNACFDYLSLGGICSQGPIALLSGLNPRPISLFLHFFAVAIYGVGRLLIPFPSPKRMWLGARLILGASGIIFPIIKSEGLRQMFFPAIVPA-YYRAPP 537          
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.675e-31
Identity = 61/126 (48.41%), Postives = 84/126 (66.67%), Query Frame = 3
Query:    3 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAY 380
            FY +RKP+++T+NTL  A  QV  AS DEA++ MRQ C+DYLS GG  +SG ++LL G+NPRP+ L+ H  A+ +  +G +L PFPSP R W   R+   A  ++ P +KAEG+ QM FP    AY
Sbjct:  381 FYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLAMKMLVPHLKAEGVSQMLFPVNAAAY 506          
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 59/126 (46.83%), Postives = 86/126 (68.25%), Query Frame = 3
Query:    3 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAY 380
            FY LRKP+++T+NTL  + +QV  AS DEA++ MRQ CFDYLS GG  +SG ++L+ G+NPRPL L  H F +++  +G++L PFP+P R W   R++  +  ++ P +KAEG+ QM  P    AY
Sbjct:  383 FYALRKPMSATVNTLGNSFWQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLLSPFPTPLRVWHSLRLLDLSLKMLVPHLKAEGIGQMLSPTNAAAY 508          
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 60/127 (47.24%), Postives = 84/127 (66.14%), Query Frame = 3
Query:    3 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAYY 383
            FY +RKP+++T+NTL  A  QV   S DEA++ MRQ  +DYL  GG  +SG ++LL G+NPRPL LV H  A+ +  +G++L PFPSP R W   ++   A  ++ P +KAEG+ QM FPA   AY+
Sbjct:  382 FYDIRKPMSATVNTLGNAFSQVLIGSTDEAKEAMRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLLSPFPSPLRIWHSLKLFGLAMKMLVPNLKAEGVSQMLFPANAAAYH 508          
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.902e-26
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAY 380
            FY +RKP+++T+NTLA    QV  A+ DEAR+ MRQ CF+YL+ G   + G +++L G+NP PL LVLH  A+ +  +G +L PFPSP RFW   RI+  A  ++   +  EG ++M  P    AY
Sbjct:  381 FYIIRKPMSATVNTLASIFSQVLVATTDEAREGMRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTSMGHLLSPFPSPRRFWHSLRILAWALQMLGAHLVDEGFKEMLIPTNAAAY 506          
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 3
Query:    3 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAY 380
            FY +RKP+++T+NTL  A  QV  AS DEA++ MRQ CFDYLS GG  +SG ++LL G+NPRPL L+ H   + +  +G++L PFPSP   W   R           +  AEG+ QM  PA   AY
Sbjct:  382 FYVIRKPMSATVNTLGNAFSQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGMMALLGGMNPRPLSLIFHLCGITLSSIGQLLSPFPSPLGIWHSLR-----------LFGAEGVSQMLSPAYAAAY 496          
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 3
Query:    3 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIMKAE 338
            F++ ++  +  +N LA ALY++FSA+ D  R ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF+VA+Y         P    P   +    I+  A  IIFP++ +E
Sbjct:  454 FWSRKRSHSFVVNVLAQALYELFSATDDSLR-QLRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVYATYFCFKSEPWATKPRALFSSGAILYKACSIIFPLIYSE 567          
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 3
Query:    3 FYTLRKPVAS-TINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIMKAE 338
            FY  RK   S  +N LA ALY++FSA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL L+ HFFAVAIY V       P    P      + ++  A  +IFP++ +E
Sbjct:  454 FYWARKTSHSFVVNILAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLALIGHFFAVAIYAVYFCFKSEPWITKPRALLSSSAVLYKACSVIFPLIYSE 568          
BLAST of DR908305 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 44/115 (38.26%), Postives = 70/115 (60.87%), Query Frame = 3
Query:    3 FYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVLHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIMKAE 338
            F++ ++  +  +N LA ALY++FSA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF+VAIY         P    P   +    ++  A  I+FP++ +E
Sbjct:  453 FWSRKRTHSFVVNVLAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIYATYFCFKSEPWATKPRALFSSGAVLYKACSILFPLIYSE 566          
The following BLAST results are available for this feature:
BLAST of DR908305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ERG1_PANGI3.179e-5781.06Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH6.675e-3148.41Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_BRANA2.536e-3046.83Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH1.644e-2947.24Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG13_ARATH2.902e-2644.44Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG11_BRANA6.465e-2646.03Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG1_RAT2.305e-1540.00Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_HUMAN3.010e-1543.10Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_MOUSE3.931e-1538.26Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16433 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-43_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908305 ID=DR908305; Name=DR908305; organism=Citrus sinensis; type=EST; length=668bp
CCTTTTACACCTTGCGTAAGCCAGTGGCATCCACCATCAATACATTGGCC
GGTGCCTTGTACCAGGTATTTTCTGCATCTCCTGATGAAGCAAGGAAGGA
AATGCGCCAGGCTTGCTTTGATTATCTAAGTCTTGGAGGTATCTTCTCGT
CAGGACCAGTCTCTCTGCTCTCAGGCTTAAATCCCCGTCCATTAATCTTG
GTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGTCGAATTTTACT
GCCATTTCCTTCACCTTATCGCTTCTGGATTGGAGCTAGAATAATTACGA
GTGCATCGGGAATCATCTTCCCTATTATGAAGGCAGAAGGGTTGCGACAA
ATGTTCTTCCCTGCAACTGTTCCTGCATATTATTACCAAGCTCCACCTAG
TAACTGAAATCTGAGTTTTGCAGAAAATTGAAGTAGTACGAATTAACATC
CGTCGAGACAAGCTAGGCTGCACTGGTATCTGCCTTCCTTTGTTCAATTC
TTGAGGGAGGCCAATGCCTAGAAGAATTGATGTGCGGTACTACATTTTTT
TTGTTGTTTTGTTTTGTATTTATAGATTTTTGTTTCTTTAGGATGTTAAT
AAACAGTAGCCTGAAATTATGGTATATATTTTTTTTCTCTGAAACATTAT
TCTTAGGCTATTGTAATC
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