DR908304

Overview
NameDR908304
Unique NameDR908304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908304 vs. ExPASy Swiss-Prot
Match: Y5208_ARATH (Uncharacterized protein At5g12080 OS=Arabidopsis thaliana GN=At5g12080 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 9.787e-71
Identity = 124/188 (65.96%), Postives = 158/188 (84.04%), Query Frame = 1
Query:   25 WLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKIFEN 588
            WLLL+ +ATTKV++F S+Q VA AF+ G+TC+ +FE+I+FVFVMHP+DVGDRCVVDGV +LVEEMN+LTT+FLKL+NEK+ YPN+VLATKPISNY RSP+M +TVEFSI+F+TP+ KI  LKERI  YLE N  HW P HSVVVKEIEN+NK+K+ALY +HT+ FQE  E+N RR+ L   +K++ E+
Sbjct:  529 WLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSPNMGETVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSDHTITFQENRERNLRRTELSLAIKRMLED 716          

HSP 2 Score: 23.8682 bits (50), Expect = 9.787e-71
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  567 IKENF*ELEINYSLLPQQVHL 629
            IK    +L I+Y+LLPQ ++L
Sbjct:  710 IKRMLEDLHIDYTLLPQDINL 730          
BLAST of DR908304 vs. ExPASy Swiss-Prot
Match: Y1861_ARATH (Uncharacterized mscS family protein At1g78610 OS=Arabidopsis thaliana GN=At1g78610 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.456e-57
Identity = 100/185 (54.05%), Postives = 139/185 (75.14%), Query Frame = 1
Query:   25 WLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKI 579
            WL+++GI +TK +V +SSQ V  AF+FG  C+ +FE+II++FV+HPFDVGDRC +DGV ++VEEMNILTT+FL+  N+K+ YPNS+L TK I NY RSPDM D +EFSI   TP EKI ++K+RI  Y+E    HW+P   +V K++E++N ++IA++  H MN Q+ GEK  RRS L+ E+ KI
Sbjct:  628 WLIILGITSTKFLVVMSSQVVVVAFIFGNMCKIVFESIIYLFVIHPFDVGDRCEIDGVQMVVEEMNILTTVFLRFDNQKVVYPNSLLWTKSIGNYYRSPDMGDGIEFSIHITTPAEKIILIKQRITSYIEGKKDHWYPAPMIVFKDMESLNSVRIAVWPTHRMNHQDMGEKWARRSQLVEEIAKI 812          
BLAST of DR908304 vs. ExPASy Swiss-Prot
Match: YEYH_SCHPO (Uncharacterized mscS family protein C2C4.17c OS=Schizosaccharomyces pombe GN=SPAC2C4.17c PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 43/172 (25.00%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   58 VIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELK 573
            ++    +  ++ +FVF T+ + +  +IIF+F  HPFD+ D  +V+ +   V  +++L T+F  +    +  PNS+L T  I N  RS   S+T+     FAT  +++  L++ +  +++ N   + P   + V +   ++ +K  +   +  N+Q    +  RR+  +  LK
Sbjct:  472 ILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVSLSLLFTVFRTMGGSTVQAPNSLLNTLFIENLRRSQPQSETITIVSPFATDFKQLERLRDLLLTFVKENERDFRPIIDLNVSDFSTLDSLKFTVTYYYKSNWQNVSLQCVRRNKFMCALK 643          
BLAST of DR908304 vs. ExPASy Swiss-Prot
Match: YC1B_SCHPO (Uncharacterized mscS family protein C1183.11 OS=Schizosaccharomyces pombe GN=SPCC1183.11 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 53/193 (27.46%), Postives = 107/193 (55.44%), Query Frame = 1
Query:   25 WLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDR--CVVDG--VPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRS----ALITELKKI 579
            +L L+    + V+    +  +  +++F  + + +  +IIFVFV HP+DVGDR   +++G     +V+E++I++T F  L+ + I  PNS+L T  I N  RS  ++D V  ++ F T +++I  L+ +I  +L+     + P+    V ++ ++  + + +   H  NFQ+   +  RR+    AL+T ++++
Sbjct:  612 FLYLIARNFSGVLTSAGTTLLGLSWLFSGSAQELLSSIIFVFVKHPYDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIADPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRDYKPDLLTEVTDLPDLYSMSLCVVFFHKYNFQDEVLRMRRRNMFMCALMTYMQEL 804          
The following BLAST results are available for this feature:
BLAST of DR908304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y5208_ARATH9.787e-7165.96Uncharacterized protein At5g12080 OS=Arabidopsis t... [more]
Y1861_ARATH2.456e-5754.05Uncharacterized mscS family protein At1g78610 OS=A... [more]
YEYH_SCHPO2.747e-1625.00Uncharacterized mscS family protein C2C4.17c OS=Sc... [more]
YC1B_SCHPO1.364e-1527.46Uncharacterized mscS family protein C1183.11 OS=Sc... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16432 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908304 ID=DR908304; Name=DR908304; organism=Citrus sinensis; type=EST; length=669bp
GTTGTAGTTGTGACCATTATTGTGTGGCTCCTTTTAATGGGAATTGCAAC
AACAAAAGTTATTGTCTTCCTCTCTTCACAATTTGTGGCCGCGGCTTTTG
TGTTTGGCACCACCTGCAGGACTATATTTGAAGCGATCATATTTGTATTT
GTGATGCATCCATTTGATGTTGGGGACCGTTGTGTTGTTGATGGCGTTCC
ATTGTTGGTCGAAGAAATGAACATATTGACAACGATTTTTCTGAAGCTTA
GCAATGAAAAGATAAGCTATCCCAATTCAGTTTTGGCTACAAAGCCCATC
AGCAATTATAATAGAAGTCCGGATATGAGTGATACAGTTGAATTCTCAAT
TGCTTTTGCGACACCAATTGAGAAAATTGGCATGCTGAAAGAAAGAATAA
AGCTGTATCTGGAGAATAATTCCCTACATTGGCATCCTAACCATTCTGTA
GTGGTGAAAGAAATTGAGAATGTGAACAAGATAAAGATAGCTCTCTATTG
TAATCACACGATGAACTTCCAAGAATTCGGAGAGAAGAACAATCGAAGAA
GCGCATTGATCACTGAATTAAAGAAAATTTTTGAGAACTAGAGATAAACT
ACAGTCTACTGCCCCAACAAGTTCATCTTCACCATATTGGGACAGAATCG
GCAACTTTGACGGCAATGA
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