DR908300

Overview
NameDR908300
Unique NameDR908300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908300_ssr158 microsatellite DR908300_ssr158:158..169. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10852 contig Csv1_Contig10852:27..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908300 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 74/197 (37.56%), Postives = 112/197 (56.85%), Query Frame = 2
Query:   23 TAISFLVLTFATKP-LVGLAD----PLVDVNGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNELCPLDVVQLSSDSERGTRLRFSMYD-KTSIINEDVDLNVRFST--ETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGGDRATYKIVHCPSVCESCVSLCNDVG--VSNDHARRLALTN 583
            TA+  L+  F +K    G+A+    P++D +G++++    YY++S+I               + CP  VVQ  SD + GT + FS  D K  ++    D+N+ F    +  C+  TVWR+D+YD S GKW++TT GV+G PG  TL +WFK E+ G     YK   CPSVC+SC +LC+D+G    +D   RLAL++
Sbjct:    5 TAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG--VLGYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSD 199          
BLAST of DR908300 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 74/200 (37.00%), Postives = 105/200 (52.50%), Query Frame = 2
Query:   17 FVTAISFLVLTFATKPLVGLAD----PLVDVNGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNE--LCPLDVVQLSSDSERGTRLRFSMYD-KTSIINEDVDLNVRFSTETRCN--EPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGGDRATYKIVHCPSVCESCVSLCNDVGVSNDH--ARRLALTN 583
            FV+A+    L  A  PL+  AD    P++D++G K+    +YY+V  +              N   +CP  VVQ   + +    L F   + K  ++    DLN+ FS    C     TVWR+D YD S G++F+T GGV+GNPG +T+ +WFK E   G    YK+V CP+VC SC   C DVG+  D    RRLAL++
Sbjct:   13 FVSAL----LAAAANPLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGS-GFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
BLAST of DR908300 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 63/172 (36.63%), Postives = 89/172 (51.74%), Query Frame = 2
Query:   83 PLVDVNGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNEL-CPLDVVQLSSDSERGTRLRFSMYD--KTSIINEDVDLNVRFSTETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGGDRATYKIVHCPSVCESCVSLCNDVGVSND--HARRLALTN 583
            P+VD++G  V    DY++VSAI              N+  CPL VVQ   D+  G  + FS     K +I+ E VDLNV+F+    CNE T W+VD + P    W +T GG +G  G ++  + FK ++  G   +YK   CPS   + +  CN+V +  D    RRL LTN
Sbjct:    5 PIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFDN--GEPIIFSAIKNVKDNIVFESVDLNVKFNITINCNETTAWKVDRF-PGVIGWTVTLGGEKGYHGFESTHSMFKIKK-AGLPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTN 172          
BLAST of DR908300 vs. ExPASy Swiss-Prot
Match: DRTI_DELRE (Kunitz-type serine protease inhibitor DrTI OS=Delonix regia PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 47/168 (27.98%), Postives = 82/168 (48.81%), Query Frame = 2
Query:   77 ADPLVDVNGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNELCPLDVVQLSSDSERGTRLRFSMYDKT-SIINEDVDLNVRFSTETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGGDRATYKIVHCPSVCESCVSLCNDVGVSNDHARRLAL 577
            A+ + D+ G  V    +YY+VSAI                +CP+ ++Q  SD + G  +RFS  +++   I  D +L + F  +  C E + W +       G+  +  GG E +P  + ++ +FK E++G     YK+V CP   +S    C+D+G++ +  R L L
Sbjct:    3 AEKVYDIEGYPVFLGSEYYIVSAIIGAGGGGVRPGRTRGSMCPMSIIQEQSDLQMGLPVRFSSPEESQGKIYTDTELEIEFVEKPDCAESSKWVIVK---DSGEARVAIGGSEDHPQGELVRGFFKIEKLGS--LAYKLVFCP---KSSSGSCSDIGINYEGRRSLVL 162          
BLAST of DR908300 vs. ExPASy Swiss-Prot
Match: SPI2_SOLTU (Serine protease inhibitor 2 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 52/184 (28.26%), Postives = 82/184 (44.57%), Query Frame = 2
Query:   77 ADPLVDVNGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNELCPL--DVVQLSSD-SERGTRLRF----SMYDKTSIINEDVDLNVRFSTETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGGDRATYKIVHCPSVCESCVSLCNDVGVSNDHA-RRLALTNGRALAVV 604
            A P++DV G ++++   Y ++S                N   P    + + +SD    GT +RF    S + +    NE +++    ST   C   T+W+V  YD S G   + TGG  G    Q   +WFK   +   +  Y +++CP    S    C+ VGV + +  RRLAL N   L V+
Sbjct:    5 ATPVLDVTGKELDSRLSYRIISTFWGALGGDVYLGKSPNSDAPCANGIFRYNSDVGPSGTPVRFIGSSSHFGQGIFENELLNIQFAISTSKLCVSYTIWKVGDYDASLGTMLLETGGTIG----QADSSWFKI--VKSSQLGYNLLYCPVTSSSDDQFCSKVGVVHQNGKRRLALVNENPLDVL 182          
The following BLAST results are available for this feature:
BLAST of DR908300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ASP_THECC7.447e-3037.5621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU9.104e-2837.00Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA1.457e-1736.63Latex serine proteinase inhibitor OS=Carica papaya... [more]
DRTI_DELRE1.969e-1427.98Kunitz-type serine protease inhibitor DrTI OS=Delo... [more]
SPI2_SOLTU1.560e-1128.26Serine protease inhibitor 2 OS=Solanum tuberosum P... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16428 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908300 ID=DR908300; Name=DR908300; organism=Citrus sinensis; type=EST; length=670bp
CAAAATGAGTACTCCTTTTGTAACTGCAATCTCCTTCCTTGTCCTTACCT
TTGCCACAAAACCGCTTGTGGGACTCGCTGATCCTTTGGTTGATGTCAAT
GGCAACAAGGTCGAAGCATCCCGAGACTACTATTTGGTCTCAGCAATTCG
AGGAGCAGGCGGCGGCGGCCTCACCCTCTTCAGGGGCAGAAACGAACTCT
GCCCACTTGATGTTGTCCAACTAAGTTCCGACTCAGAAAGAGGAACCCGT
TTAAGATTCTCAATGTATGATAAAACTAGTATTATCAATGAAGATGTGGA
TCTGAACGTGAGATTCTCGACAGAGACTCGCTGCAACGAACCAACAGTAT
GGAGAGTCGACAGCTATGATCCATCGAGAGGAAAATGGTTTATAACAACT
GGTGGTGTTGAAGGAAACCCTGGAGCTCAAACTTTGAAAAACTGGTTTAA
GTTTGAGAGAATTGGAGGAGATCGAGCTACGTACAAGATTGTTCACTGTC
CTTCCGTTTGCGAATCCTGTGTATCTTTATGCAATGATGTTGGGGTTTCT
AACGATCATGCTCGACGTTTGGCTCTCACTAACGGGCGCGCGCTTGCTGT
TGTTCTAGTCCCTGGTAATGAGAGATCAGCCTCATGTGCGTCTTGAATGC
CCTTGTATCATTACTCTAAA
back to top