DR908298

Overview
NameDR908298
Unique NameDR908298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.269e-81
Identity = 140/183 (76.50%), Postives = 160/183 (87.43%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRK 550
            IVCDGCFSNLRRSLCNPKV+VPSCFVGL+LEN +LP  N+GHV+LADPSPILFY ISS E+RCLVD+PGQKVP ISNGE+ANYLKTVVAPQ+P+++++SF+AAVD GNI+TMPNRSMPA P+PTPGALL+GDAFNMRHPLTGGGMTVALSDIV+            D+  LC YLESFYTLRK
Sbjct:  230 IVCDGCFSNLRRSLCNPKVEVPSCFVGLILENIDLPHINHGHVILADPSPILFYKISSTEIRCLVDVPGQKVPCISNGELANYLKTVVAPQVPKQLYNSFIAAVDKGNIRTMPNRSMPADPHPTPGALLLGDAFNMRHPLTGGGMTVALSDIVLIRDLLRPLRDLHDSSTLCKYLESFYTLRK 412          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.390e-36
Identity = 80/184 (43.48%), Postives = 110/184 (59.78%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRK 550
            +VCDGC+SNLRRS+ +   +V S  VG V +NC L       ++++ PS  + Y ISS +VRC+++I    +PSISNGEMA YLK  +APQ+P E+   F+  +D G  IK MP + M A      G +++GDAFNMRHP    GM V LSDI+I            DA  +   ++SFY +RK
Sbjct:  204 VVCDGCYSNLRRSVNDNNAEVISYQVGYVSKNCQLEDPEKLKLIMSKPSFTMLYQISSTDVRCVMEIFPGNIPSISNGEMAVYLKNTMAPQVPPELRKIFLKGIDEGAQIKAMPTKRMEATLSEKQGVIVLGDAFNMRHPAIASGMMVVLSDILILRRLLQPLRNLSDANKVSEVIKSFYVIRK 387          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.083e-36
Identity = 76/184 (41.30%), Postives = 110/184 (59.78%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRK 550
            +VCDGC+SNLRRSL +   +V S  VG + +NC L       ++++ PS  + Y ISS +VRC+ ++    +PSISNGEMA ++K  +APQ+P ++   F+  +D G +IK MP + M A      G +L+GDAFNMRHP    GM V LSDI+I            +A  +   ++SFY +RK
Sbjct:  203 VVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSISNGEMATFVKNTIAPQVPLKLRKIFLKGIDEGEHIKAMPTKKMTATLSEKKGVILLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNAQKISQVIKSFYDIRK 386          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.473e-33
Identity = 70/184 (38.04%), Postives = 110/184 (59.78%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRK 550
            +VCDGC SNLRRSL +   +V +  +G +  NC L   +  H+++A PS  + Y +SS +VRC  ++  + +PS+SNGEM ++++  +APQ+P ++  +F+  +D G +IK    + +PA      G +++GDAFNMRHP+   GM V LSDI+I            D   +   ++SFY LRK
Sbjct:  205 VVCDGCHSNLRRSLNDNNAEVTAYEIGYISRNCRLEQPDKLHLIMAKPSFAMLYQVSSTDVRCNFELLSKNLPSVSNGEMTSFVRNSIAPQVPLKLRKTFLKGLDEGSHIKITQAKRIPATLSRKKGVIVLGDAFNMRHPVIASGMMVLLSDILILSRLLKPLGNLGDENKVSEVMKSFYALRK 388          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.473e-33
Identity = 72/185 (38.92%), Postives = 109/185 (58.92%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPK-VDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRK 550
            +VCDGC+SNLRRSL +    ++ S  VG + +NC L      H++L+ PS  + Y ISS +VRC  ++  +  PSI+NGEM+ ++K  + PQ+P ++   F+  +D G +IK +P + M +      G +++GDAFNMRHP+   GM V LSDI+I            DA  +   + SFY +RK
Sbjct:  203 VVCDGCYSNLRRSLNDDNNAEIMSYIVGYISKNCRLEEPEKLHLILSKPSFTMVYQISSTDVRCGFEVLPENFPSIANGEMSTFMKNTIVPQVPPKLRKIFLKGIDEGAHIKVVPAKRMTSTLSKKKGVIVLGDAFNMRHPVVASGMMVLLSDILILRRLLQPLSNLGDANKVSEVINSFYDIRK 387          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33
Identity = 77/202 (38.12%), Postives = 119/202 (58.91%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPR--EIFHSFVAAVDGG--NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKVTCKISCKSTVSSVF 595
            +VCDGC+SNLRRSL +   +V S  VG V +N  L   ++ H++ + P   + Y I+S+EVRC+ ++P   +PSISNGEM+ +LK  +APQIP    +   F+  ++ G   IK+   +SM +      G +++GDAFNMRHP+   GM VALSDI I            +   + + ++SFY +RK     +  +T++S+F
Sbjct:  200 VVCDGCYSNLRRSLVDNTEEVLSYMVGYVTKNSRLEDPHSLHLIFSKPLVCVIYQITSDEVRCVAEVPADSIPSISNGEMSTFLKKSMAPQIPETGNLREIFLKGIEEGLPEIKSTATKSMSSRLCDKRGVIVLGDAFNMRHPIIASGMMVALSDICILRNLLKPLPNLSNTKKVSDLVKSFYIIRKPMS--ATVNTLASIF 399          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.343e-30
Identity = 74/185 (40.00%), Postives = 105/185 (56.76%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKVT 556
            +V DG FS  R+SL + KV V S FVG ++++      N   +VL +PSP+L Y ISS+E R LVDI G+ +P      +  Y+   + PQ+P  +  SF+ A   G ++TMP   +P +     G L++GDA+N+RHPLTGGGMTVAL DI +            D  A+    +SF+  RK T
Sbjct:  280 VVADGLFSKFRKSLISSKVSVSSHFVGFLMKDAPQFKPNFAELVLVNPSPVLIYQISSSETRVLVDIRGE-LPR----NLREYMAEQIYPQLPEHLKESFLEASQNGRLRTMPASFLPPSSVNKRGVLILGDAYNLRHPLTGGGMTVALKDIKLWRQLLKDIPDLYDDAAIFQAKKSFFWSRKRT 459          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.702e-30
Identity = 73/185 (39.46%), Postives = 104/185 (56.22%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRKVT 556
            +V DG FS  R+SL + KV V S FVG +++N      N+  ++LA+PSP+L Y ISS+E R LVDI G+   ++       Y+   + PQIP  +   F+ A D  ++++M    +P +     G LL+GDA+NMRHPLTGGGMTVA  DI +            D  A+    +SFY  RK +
Sbjct:  282 VVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYRISSSETRVLVDIRGEMPRNLRE-----YMVEKIYPQIPDHLKEPFLEATDNSHLRSMLASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEANKSFYWARKTS 461          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.270e-29
Identity = 74/183 (40.44%), Postives = 102/183 (55.74%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIXXXXXXXXXXXXDAPALCNYLESFYTLRK 550
            +V DG FS  R++L + KV V S FVG ++++      N   +VL DPSP+L Y IS +E R LVDI G+ +P      +  Y+   + PQIP  +  SF+ A     ++TMP   +P +     G LL+GDA+N+RHPLTGGGMTVAL DI I            D  A+    +SF+  RK
Sbjct:  281 VVADGLFSKFRKNLISNKVSVSSHFVGFIMKDAPQFKANFAELVLVDPSPVLIYQISPSETRVLVDIRGE-LPR----NLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLTGGGMTVALKDIKIWRQLLKDIPDLYDDAAIFQAKKSFFWSRK 458          
BLAST of DR908298 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.129e-28
Identity = 61/151 (40.40%), Postives = 91/151 (60.26%), Query Frame = 2
Query:    2 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENNGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD 454
            IVCDGCFS  R++  +  + V   F+GL+L N +      GHV+L+  +P++ YPISS E R L++ PG+ +P +    +  Y+     P +P ++  S  AAV    +++MPN+ +P     T G +L+GD+ NMRHPLTGGGMTV   D
Sbjct:  164 IVCDGCFSKFRKAFIDHPIQVTDHFLGLILTNPDYIAPGRGHVILSKVAPMVLYPISSTEARILINYPGKNLPPMET--LKKYVLESCVPNMPEKLRPSLKAAVYNDRLRSMPNQFLPPTVNRTKGMILVGDSNNMRHPLTGGGMTVCFHD 312          
The following BLAST results are available for this feature:
BLAST of DR908298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERG1_PANGI9.269e-8176.50Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_BRANA2.390e-3643.48Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG11_ARATH9.083e-3641.30Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_BRANA2.473e-3338.04Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH2.473e-3338.92Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG13_ARATH5.510e-3338.12Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_MOUSE3.343e-3040.00Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_HUMAN5.702e-3039.46Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_RAT1.270e-2940.44Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_SCHPO3.129e-2840.40Probable squalene monooxygenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16426 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908298 ID=DR908298; Name=DR908298; organism=Citrus sinensis; type=EST; length=671bp
AATTGTATGTGATGGCTGTTTTTCGAATTTGCGTCGCTCACTTTGCAATC
CTAAGGTAGATGTTCCTTCCTGTTTTGTTGGCTTGGTCCTTGAGAACTGC
AATCTTCCATTTGAAAATAATGGGCATGTTGTACTAGCAGACCCTTCCCC
AATTTTGTTTTATCCAATTAGTAGCAACGAAGTTCGATGTCTGGTTGATA
TACCTGGTCAGAAGGTCCCTTCCATTTCAAATGGTGAAATGGCAAACTAT
TTGAAGACAGTAGTTGCGCCTCAGATTCCACGTGAAATCTTTCATTCCTT
TGTTGCTGCCGTTGACGGAGGAAATATTAAAACAATGCCAAATAGAAGCA
TGCCAGCTGCTCCCTATCCCACTCCTGGAGCTCTTTTGATGGGGGATGCA
TTCAACATGCGCCATCCCTTGACTGGGGGAGGAATGACTGTGGCACTGTC
TGATATTGTTATCTTACGTAACCTTCTCAGGCATTTAAGCAACCTTAATG
ATGCACCAGCTCTCTGCAATTACCTTGAATCCTTTTACACCTTGCGTAAG
GTAACTTGTAAAATTAGCTGTAAAAGTACTGTTTCATCTGTCTTTTTGGC
ATCTTCTTTTCCATGATTATGCTGCTTGCACATGGAAAGTTATTCACATA
CCAACCTCATGGGTTCTTTAG
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