DR908284

Overview
NameDR908284
Unique NameDR908284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908284 vs. ExPASy Swiss-Prot
Match: BH068_ARATH (Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.411e-44
Identity = 102/165 (61.82%), Postives = 116/165 (70.30%), Query Frame = 2
Query:   11 PDHSSECNSTATRG-VSKKARVQ-TPSSQTPLKVRKEKLGDRITALHQLVSPFGKTDTDSVLLEAIGYIRFLQGQIEXXXXXXXXXXXXXXIRNQHCVHGDINGAFPEAPGQLLNDTCLKRKEA-----PNQDGQGKP-KDLRSRGLCLVPLSCTQQVGSDNGAD 481
            PD SSECNS    G  +KK R+Q +PSSQ+ LKVRKEKLG RI ALHQLVSPFGKTDT SVL EAIGYIRFLQ QIE              +R+Q  + GD +  FPE PGQL+ND C+KR+ A      NQ+   +P KDLRSRGLCLVP+SCT QVGSDNGAD
Sbjct:  231 PDRSSECNSLEIGGSTNKKPRLQPSPSSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGAD 395          
BLAST of DR908284 vs. ExPASy Swiss-Prot
Match: BH133_ARATH (Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.614e-40
Identity = 95/166 (57.23%), Postives = 110/166 (66.27%), Query Frame = 2
Query:   23 SECNSTATRGVS---KKARVQTPSSQTPLKVRKEKLGDRITALHQLVSPFGKTDTDSVLLEAIGYIRFLQGQIEXXXXXXXXXXXXXXIRNQHCVHGDINGAFPEAPGQLLNDTCLKR----------KEAPNQDGQGKPKDLRSRGLCLVPLSCTQQVGSDNGAD 481
            SECNS+   G S   KK ++Q PSSQ+ LKVRKEKLG RI +LHQLVSPFGKTDT SVL EAIGYIRFL  QIE              + +QH    ++NG FPE PGQL+N+ C+KR          K  PN++     KDLRSRGLCLVP+SCT QVGSDNGAD
Sbjct:  190 SECNSSEMIGSSFANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQIEALSLPYFGTPSRNNMMHQH-AQRNMNGIFPEDPGQLVNEYCMKRGVSLSSTDNQKSNPNEEPM---KDLRSRGLCLVPISCTLQVGSDNGAD 351          
BLAST of DR908284 vs. ExPASy Swiss-Prot
Match: BH110_ARATH (Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24
Identity = 71/153 (46.41%), Postives = 85/153 (55.56%), Query Frame = 2
Query:   17 HSSECNSTATRGVSKKARVQTPSSQTPLKVRKEKLGDRITALHQLVSPFGKTDTDSVLLEAIGYIRFLQGQIEXXXXXXXXXXXXXXIRNQHCVHGDINGAFPEAPGQLLNDTCLKRKEAPNQDGQGKPKDLRSRGLCLVPLSCTQQVGSDNG 475
            H+    + A    SKK RV++ SS  P KVRKEKLGDRI AL QLVSPFGKTDT SVL+EAIGYI+FLQ QIE               RN+           P    QL++ +         +  + + +DLRSRGLCLVPLSC   V  D G
Sbjct:  304 HNFLMATKAGENASKKPRVESRSSCPPFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRAS-----RNR-----------PGKASQLVSQS--------QEGDEEETRDLRSRGLCLVPLSCMTYVTGDGG 432          
BLAST of DR908284 vs. ExPASy Swiss-Prot
Match: BH113_ARATH (Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.052e-18
Identity = 61/141 (43.26%), Postives = 77/141 (54.61%), Query Frame = 2
Query:   59 KKARVQTPSSQTPLKVRKEKLGDRITALHQLVSPFGKTDTDSVLLEAIGYIRFLQGQIEXXXXXXXXXXXXXXIRNQHCVHGDINGAFPEAPGQLLNDTCLKRKEAPNQDGQGKPKDLRSRGLCLVPLSCTQQVGSDNGAD 481
            K  R Q  SS    KVRKE+LG+RI AL QLVSP+GKTD  SVL EA+GYI+FLQ QI+              + + + ++  ++G      G +  D               K KDLRSRGLCLVP+S T  V + NGAD
Sbjct:  140 KGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQ-------------VLCSPYLINHSLDG------GVVTGDVMAAM----------KAKDLRSRGLCLVPVSSTVHVENSNGAD 251          
BLAST of DR908284 vs. ExPASy Swiss-Prot
Match: BH114_ARATH (Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.126e-17
Identity = 58/136 (42.65%), Postives = 73/136 (53.68%), Query Frame = 2
Query:   59 KKARVQTPSSQTPLKVRKEKLGDRITALHQLVSPFGKTDTDSVLLEAIGYIRFLQGQIEXXXXXXXXXXXXXXIRNQHCVHGDINGAFPEAPGQLLNDTCLKRKEAPNQDGQGKPKDLRSRGLCLVPLSCTQQVGS 466
            K+ R++T S     KVRKEKLGDRITAL QLVSPFGKTDT SVL EA+ YI+FLQ Q+               ++ Q C     N       G++  D C  R+            DL SRGLCL+P+S +  V +
Sbjct:  159 KRPRLETLSPLPSFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQV--TVLSNPEQNTIGSVQQQQC----SNKKSINTQGEVEEDECSPRRYV----------DLSSRGLCLMPISASYPVAA 278          
BLAST of DR908284 vs. ExPASy Swiss-Prot
Match: BH103_ARATH (Transcription factor bHLH103 OS=Arabidopsis thaliana GN=BHLH103 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 60/146 (41.10%), Postives = 73/146 (50.00%), Query Frame = 2
Query:   14 DHSSECNSTATRGVSKKARVQTPSSQTPLKVRKEKLGDRITALHQLVSPFGKTDTDSVLLEAIGYIRFLQGQIEXXXXXXXXXXXXXXIRNQHCVHGDINGAFPEAPGQLLNDTCLKRKEAPNQDGQGKPKDLRSRGLCLVPLSCT 451
            + S E     +    K+ R++TPS     KVRKEKLGDRITAL QLVSPFGKTDT SVL +AI YI+FLQ QI                       G+      ++     N  C  R            +DLRSRGLCL+P+S T
Sbjct:  161 EKSGELEDIESSQPLKRPRLETPSHFPSFKVRKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSPHLNSIG--------SGEQKQWSDKSSNNTHNQNCSPR------------QDLRSRGLCLMPISST 286          
BLAST of DR908284 vs. ExPASy Swiss-Prot
Match: BH112_ARATH (Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.176e-16
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 2
Query:   56 SKKARVQTPSSQTPLKVRKEKLGDRITALHQLVSPFGKTDTDSVLLEAIGYIRFLQGQIEXXXXXXXXXXXXXXIRNQHCVHGDINGAFPEAPGQLLNDTCLKRKEAPNQDGQGKPKDLRSRGLCLVPLSCTQQVGSDNGAD 481
            +KK RV TPS     KVRKE L D+IT+L QLVSPFGKTDT SVL EAI YI+FL  Q+               +   +   G  N    +  G           ++ +QD + +  +LR  GLCLVP+S T  V ++  AD
Sbjct:  265 AKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQV-------------TVLSTPYMKQGASNQQQQQISG-----------KSKSQD-ENENHELRGHGLCLVPISSTFPVANETTAD 381          
The following BLAST results are available for this feature:
BLAST of DR908284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BH068_ARATH1.411e-4461.82Transcription factor bHLH68 OS=Arabidopsis thalian... [more]
BH133_ARATH1.614e-4057.23Transcription factor bHLH133 OS=Arabidopsis thalia... [more]
BH110_ARATH4.718e-2446.41Transcription factor bHLH110 OS=Arabidopsis thalia... [more]
BH113_ARATH5.052e-1843.26Transcription factor bHLH113 OS=Arabidopsis thalia... [more]
BH114_ARATH1.126e-1742.65Transcription factor bHLH114 OS=Arabidopsis thalia... [more]
BH103_ARATH1.920e-1741.10Transcription factor bHLH103 OS=Arabidopsis thalia... [more]
BH112_ARATH6.176e-1640.14Transcription factor bHLH112 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16412 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908284 ID=DR908284; Name=DR908284; organism=Citrus sinensis; type=EST; length=673bp
TCAGCAACATCCTGATCATTCATCTGAGTGTAATAGCACAGCAACTAGAG
GAGTGAGCAAGAAAGCTAGGGTTCAGACCCCTTCAAGCCAAACACCTTTG
AAAGTGAGGAAGGAGAAGCTAGGAGACAGAATTACAGCCCTTCACCAACT
GGTTTCCCCATTTGGAAAGACTGACACTGATTCTGTCTTGTTAGAAGCTA
TTGGGTATATTAGATTCCTTCAAGGTCAAATTGAGGCACTCAGCTCCCCT
TATTTGAGCACTTCTCCTTCGGCAAGCATAAGGAACCAACATTGTGTTCA
CGGAGATATAAATGGTGCATTTCCTGAAGCCCCAGGTCAGCTGTTGAATG
ACACCTGCCTCAAAAGAAAAGAAGCTCCTAACCAGGATGGCCAAGGCAAG
CCAAAGGACTTGAGGAGTAGAGGATTGTGCTTGGTTCCACTGTCTTGCAC
TCAGCAAGTTGGGAGTGACAACGGAGCTGATTTCTGGGCTCCGGCGCTCG
GTGGCGGTTTTTGAGCTGCCTTTGGCAGCATATTTGGAGATTTTCATGGG
AATGGTATAACATCATGAGCAGTCACTCTGCTGAAATTAAGACTGATTGC
TCATGATGCTATGCATTCTAACTATCTAGCCAGTTAGATCAGATGTGCTT
ATTCTTCTTACTGCAACTCTCTT
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