DR908274

Overview
NameDR908274
Unique NameDR908274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9875 contig Csv1_Contig9875:1308..1982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_MOUSE (Thymidylate synthase OS=Mus musculus GN=Tyms PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.574e-72
Identity = 79/114 (69.30%), Postives = 93/114 (81.58%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG 344
            WD N SR++LDS+G + R+EGDLGPVYGFQWR+FGA Y +M +DYSGQG DQL  VI+ IK NP+DRRI++ AWNP DL LMALPPCH   QFY+ NGELSCQ+YQRS DMG G
Sbjct:  103 WDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGAEYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLG 216          

HSP 2 Score: 97.0561 bits (240), Expect = 2.574e-72
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKI 522
            LGVPFNIASYALLT MIAH+  L PGDF+H +GDAH+Y NH+ PL+ QLQ+ P+PFP LKI
Sbjct:  215 LGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLKI 275          

HSP 3 Score: 37.7354 bits (86), Expect = 2.574e-72
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  534 EDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            E ID F  EDF++ GY+PH  I+M+MAV
Sbjct:  280 ETIDDFKVEDFQIEGYNPHPTIKMEMAV 307          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_HUMAN (Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 3.352e-72
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG 344
            WD N SR++LDS+G + REEGDLGPVYGFQWR+FGA Y +M +DYSGQG DQL  VI+ IK NP+DRRI++ AWNP DL LMALPPCH   QFY+ N ELSCQ+YQRS DMG G
Sbjct:  109 WDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLG 222          

HSP 2 Score: 96.2857 bits (238), Expect = 3.352e-72
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKI 522
            LGVPFNIASYALLT MIAH+  L PGDFIH +GDAH+Y NH+ PL+ QLQ+ P+PFP L+I
Sbjct:  221 LGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRI 281          

HSP 3 Score: 39.2762 bits (90), Expect = 3.352e-72
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 3
Query:  534 EDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            E ID F AEDF++ GY+PH  I+M+MAV
Sbjct:  286 EKIDDFKAEDFQIEGYNPHPTIKMEMAV 313          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_RAT (Thymidylate synthase OS=Rattus norvegicus GN=Tyms PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.647e-72
Identity = 79/114 (69.30%), Postives = 93/114 (81.58%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG 344
            WD N SR++LDS+G + R+EGDLGPVYGFQWR+FGA Y +M +DYSGQG DQL  VI+ IK NP+DRRI++ AWNP DL LMALPPCH   QFY+ NGELSCQ+YQRS DMG G
Sbjct:  103 WDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGADYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLG 216          

HSP 2 Score: 95.9005 bits (237), Expect = 9.647e-72
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKI 522
            LGVPFNIASYALLT MIAH+  L PGDF+H +GDAH+Y NH+ PL+ QLQ+ P+PFP L+I
Sbjct:  215 LGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRI 275          

HSP 3 Score: 37.7354 bits (86), Expect = 9.647e-72
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  534 EDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            E ID F  EDF++ GY+PH  I+M+MAV
Sbjct:  280 ETIDDFKVEDFQIEGYNPHPTIKMEMAV 307          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: DRTS_DAUCA (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.655e-69
Identity = 139/219 (63.47%), Postives = 157/219 (71.69%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG------------CAV*H-CFICPLD-MHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSETAKAFSNFEDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            W+GN SREYLDS+GLTDREEGDLGP+YGFQWR+FGARYT+MHADYSGQGFDQLLDVI+KIKNNP+DRRI+ SAWNPSDL+LMALPPCHMFAQFY+ANGELSCQMYQRSADMG G            C + H C + P D +H               H   + LS   +    +     K F   +  S E+DIDSF A DFKLIGYDPHQKIEMKMAV
Sbjct:  323 WEGNGSREYLDSIGLTDREEGDLGPIYGFQWRHFGARYTDMHADYSGQGFDQLLDVISKIKNNPDDRRIIQSAWNPSDLRLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIAAYALLTCMIAHVCDLVPGDFVHSIG----------DAHVYSNHLSDLFET---SFRMLPKTFPVLKINSGEKDIDSFEAADFKLIGYDPHQKIEMKMAV 528          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: TYSY_EHV2 (Thymidylate synthase OS=Equine herpesvirus 2 (strain 86/87) GN=70 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 7.126e-69
Identity = 75/114 (65.79%), Postives = 87/114 (76.32%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG 344
            WD N SR++L   GL  RE GDLGPVYGFQWR+FGA Y +   DY GQG DQL D+I +IK NP  RR+VL+AWNP+DL  MALPPCH+  QFY+A GELSCQ+YQRS DMG G
Sbjct:   85 WDANGSRDFLARAGLGHREPGDLGPVYGFQWRHFGAAYVDSKTDYRGQGVDQLRDLIGEIKRNPESRRLVLTAWNPADLPAMALPPCHLLCQFYVAGGELSCQLYQRSGDMGLG 198          

HSP 2 Score: 94.3597 bits (233), Expect = 7.126e-69
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  340 LGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKI 522
            LGVPFNIASY+LLT M+AH+  L PGDFIHV+GDAHVY NHV PL+ QL + P+PFP L+I
Sbjct:  197 LGVPFNIASYSLLTYMVAHLTGLEPGDFIHVLGDAHVYLNHVEPLKLQLTRSPRPFPRLRI 257          

HSP 3 Score: 40.0466 bits (92), Expect = 7.126e-69
Identity = 19/28 (67.86%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  534 EDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            EDID F AEDF L GY PH  I M+MAV
Sbjct:  262 EDIDDFRAEDFALEGYHPHAAIPMEMAV 289          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: DRTS2_ARATH (Bifunctional dihydrofolate reductase-thymidylate synthase 2 OS=Arabidopsis thaliana GN=THY-2 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.549e-67
Identity = 135/219 (61.64%), Postives = 158/219 (72.15%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG------------CAV*H-CFICPLD-MHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSETAKAFSNFEDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            WDGNASR YLD +GLT+REEGDLGPVYGFQWR+FGA+YT+MHADY+GQGFDQLLDVINKIKNNP+DRRI++SAWNPSDLKLMALPPCHMFAQFY+ANGELSCQMYQRSADMG G            C + H C + P D +H            +  H     L +  + P        K F   +    ++DIDSFVA+DF+LIGYDPH+KI+MKMAV
Sbjct:  361 WDGNASRAYLDGIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIIMSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYSLLTCILAHVCDLVPGDFIHVIG-----DAHVYKNH--VRPLQEQLENP-------PKPFPVLKINPEKKDIDSFVADDFELIGYDPHKKIDMKMAV 565          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: DRTS_SOYBN (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.004e-66
Identity = 130/208 (62.50%), Postives = 148/208 (71.15%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPGC---AV*HCFICPLDMHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSETAKAFSNFEDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            WDGNASREYLD VGLT+REEGDLGPVYGFQWR+FGARYT+MH DYSGQGFDQLLDVINKIK NP+DRRI+LSAWNP DLKLMALPPCHMFAQFY+A+GELSCQMYQRSADMG G       +  +  +  H C  +      F              +          K F   +    ++DIDSFVA DFKLIGYDPHQKI+MK++V
Sbjct:  326 WDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKRNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGIPFNIASYALLTCMIAHVCDLI---PGDFIHVIGDAHIYRNHVRPLQEQLHNQPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHQKIDMKLSV 530          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: DRTS1_ARATH (Bifunctional dihydrofolate reductase-thymidylate synthase 1 OS=Arabidopsis thaliana GN=THY-1 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 9.397e-65
Identity = 129/209 (61.72%), Postives = 147/209 (70.33%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPG----CAV*HCFICPLDMHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSETAKAFSNFEDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            WDGNASREYLD +GLT+REEGDLGPVYGFQWR+FGA+YT+MHADY+GQGFDQL+DVI+KIKNNP+DRRI++SAWNPSDLKLMALPPCHMFAQFY+A GELSCQMYQRSADMG G     A      C L  H C  +      F              +          K F   +    ++ IDSFVA DF L GYDPH+KIEMKMAV
Sbjct:  315 WDGNASREYLDGIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYTGQGFDQLVDVIDKIKNNPDDRRIIMSAWNPSDLKLMALPPCHMFAQFYVAEGELSCQMYQRSADMGLGVPFNIASYSLLTCML-AHVCDLV---PGDFIHVLGDAHVYKTHVRPLQEQLLNLPKPFPVMKINPEKKQIDSFVASDFDLTGYDPHKKIEMKMAV 519          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: DRTS_MAIZE (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Zea mays GN=DRTS PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.734e-64
Identity = 125/205 (60.98%), Postives = 143/205 (69.76%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPGCAV*HCFICPLDMHDCSCL*SCSWRFHSCHW*CSCLSQSCQAPGGTTSETAKAFSNFEDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            WDGNASREYL+SVGL  REEGDLGP+YGFQWR+FGA YT+MHADY+G+GFDQL+DVI+KIKN+P DRRI+LSAWNPSDLK MALPPCHMFAQFY+ NGELSCQMYQRSADMG G          L              F              +A      +  K F   +    ++DIDSF+A DFKL+GYDPHQKIEMKMAV
Sbjct:  317 WDGNASREYLNSVGLAHREEGDLGPIYGFQWRHFGAEYTDMHADYTGKGFDQLMDVIDKIKNDPEDRRIILSAWNPSDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPFNIASYSLLTYMIAQVCDLSPGDFVHVIGDAHVYRNHVRALEEQIQKMPKPFPILKINPSKKDIDSFMASDFKLVGYDPHQKIEMKMAV 521          
BLAST of DR908274 vs. ExPASy Swiss-Prot
Match: DRTS_ORYSJ (Putative bifunctional dihydrofolate reductase-thymidylate synthase OS=Oryza sativa subsp. japonica GN=Os12g0446900 PE=3 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.571e-64
Identity = 126/208 (60.58%), Postives = 144/208 (69.23%), Query Frame = 3
Query:    3 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRNFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGPGCAV*HCFICPLDMHDCSCL*SCSWR---FHSCHW*CSCLSQSCQAPGGTTSETAKAFSNFEDQS*EEDIDSFVAEDFKLIGYDPHQKIEMKMAV 617
            WDGNASR+YLDS+GLT REEGDLGPVYGFQWR+FGA YT+MHADY G+GFDQL+DVI+KIKNNP+DRRI+LSAWNP+DLK MALPPCHMFAQFY+ NGELSCQMYQRSADMG G       I    +  C     C      F              +A      +  K F   +    ++DIDSFV  DFKL+ YDPH KIEMKMAV
Sbjct:  290 WDGNASRQYLDSIGLTQREEGDLGPVYGFQWRHFGAEYTDMHADYVGKGFDQLMDVIDKIKNNPDDRRIILSAWNPTDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPF---NIASYSLLTCMIAQVCDLSPGDFVHVIGDAHVYRTHVEALEEQMRKQPKPFPILKINPVKKDIDSFVTSDFKLVRYDPHHKIEMKMAV 494          
The following BLAST results are available for this feature:
BLAST of DR908274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 394
Match NameE-valueIdentityDescription
TYSY_MOUSE2.574e-7269.30Thymidylate synthase OS=Mus musculus GN=Tyms PE=2 ... [more]
TYSY_HUMAN3.352e-7269.30Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 ... [more]
TYSY_RAT9.647e-7269.30Thymidylate synthase OS=Rattus norvegicus GN=Tyms ... [more]
DRTS_DAUCA1.655e-6963.47Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_EHV27.126e-6965.79Thymidylate synthase OS=Equine herpesvirus 2 (stra... [more]
DRTS2_ARATH1.549e-6761.64Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_SOYBN1.004e-6662.50Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS1_ARATH9.397e-6561.72Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_MAIZE2.734e-6460.98Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_ORYSJ3.571e-6460.58Putative bifunctional dihydrofolate reductase-thym... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16402 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908274 ID=DR908274; Name=DR908274; organism=Citrus sinensis; type=EST; length=675bp
TATGGGATGGCAATGCATCCAGGGAATATCTTGATAGTGTTGGTTTGACG
GACAGAGAGGAGGGTGACCTAGGACCTGTATATGGTTTTCAATGGAGGAA
CTTTGGTGCAAGGTATACTAACATGCATGCTGACTACTCTGGCCAAGGCT
TTGATCAGTTGCTAGATGTTATTAACAAGATTAAGAATAATCCAAATGAT
CGGCGGATTGTACTCTCGGCTTGGAATCCTTCTGATCTCAAATTGATGGC
GCTTCCACCTTGCCACATGTTTGCTCAGTTCTATATGGCTAATGGGGAGT
TATCATGTCAAATGTATCAGCGCTCTGCTGATATGGGCCCTGGGTGTGCC
GTTTAACATTGCTTCATATGCCCTCTTGACATGCATGATTGCTCATGTTT
GTGATCTTGCTCCTGGCGATTTCATTCATGTCATTGGTGATGCTCATGTT
TATCGCAATCATGTCAGGCCCCTGGAGGAACAACTTCAGAAACTGCCAAA
GCCTTTTCCAATTTTGAAGATCAATCCTGAGAAGAAGATATAGATTCTTT
TGTAGCAGAGGATTTCAAACTTATAGGTTATGATCCACACCAGAAAATAG
AAATGAAAATGGCGGTATAGATCTCTCTTATAGGGTCAGTAACTCACAGA
CTCTGGTCCCTCCTAGGCAATAATT
back to top