EY680402

Overview
NameEY680402
Unique NameEY680402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY680402 vs. ExPASy Swiss-Prot
Match: SPL8_ARATH (Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.278e-17
Identity = 52/108 (48.15%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:  151 NRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQKSQLEPEILAKXXXXXXXXXXXXXXXXXXPPRMSLDCFRQKPSQAT------ASTSAGSLFFSSG 456
            +RFHLLSEFDNGKRSCRKRLADHNRRRRK  Q  + T  QD    +  P+                      PP +SL+CFRQ+  Q T      AS+S+ S+FFSSG
Sbjct:  233 SRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASAT--QDTGTGKTTPK-----SPNDSGVKASSSPSSNAPPTISLECFRQRQFQTTASSSTSASSSSNSMFFSSG 333
The following BLAST results are available for this feature:
BLAST of EY680402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPL8_ARATH6.278e-1748.15Squamosa promoter-binding-like protein 8 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-F11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680402 ID=EY680402; Name=EY680402; organism=Citrus sinensis; type=EST; length=844bp
CCCGAGGGTAGTCTCGTCTGTGAAATTTAACTTGATATTGTCGCCACACT
TTCCATTTACGTATACCGTTCTTTTTGCTTCACATACCATTGTTGATAAA
TGGTAAATTGATTTAAACTAATTCTTTGAGTTTTGATGTTTGGAAATGAA
AACAGATTCCATCTTCTCTCTGAATTCGATAATGGAAAACGAAGTTGCAG
AAAGAGACTAGCTGATCACAATCGTCGCAGGCGAAAATCTCAGCAACAGC
CCACTACTACTCCTCTTCAAGATAACCAAAAGTCCCAGCTTGAACCCGAA
ATTCTCGCAAAGTCACCTCCAGATTCAGGAGCTCACTCGTCGTCGTCAGT
GACGGTTGCTGTGTCACCGCCGAGAATGTCATTGGATTGTTTCAGGCAAA
AACCTTCCCAAGCGACTGCTTCGACTTCAGCAGGCTCACTTTTTTTCTCG
AGTGGGTAACCAATATCACTGGGAGTATTTATTTTAGCTAGCCAGCTTTT
GATTAATAACGTAGTGATTAGTGAACTGAACTACTGTCTGCCTTTTTTTT
TTTTTTTTTTTTTAAACTCTCAATGTTAGTTTACTCGTAAATTGGTGCTA
GAAATTGCATCATAATGAACTAATCATGGAACATCATGCTATTGGCTATA
TATTTTACTTTTGCTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGGGGGGGCCCCTCTAAAGGAATCAAGTTTATACTACGCCGGGGTT
GGCAAGTTCTAAACTCTTTTAAAAGGGTCCCCCAAATTTCATTTCCCGGG
GCCCCCGTTTTTAAACCGTCGGGGATGGGGAAAAAACCCTGGGG
back to top