DR908243

Overview
NameDR908243
Unique NameDR908243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6335 contig Csv1_Contig6335:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: THIJ_SALTY (Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 75/174 (43.10%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASV--EDKPEILASRQIKLVADVLIDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKLSDQSEIENRVVVDG--NLITSRGPGTSMEFALAIVEKFFGR 649
            S Q LV +A GSEE EAV  ID+L R   +V  ASV  +    I+ SR +KL+AD  + E A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+ A VL PH +      T FP + +K+  +  ++ RVV D    L+TS+GPGT+++F L I++   GR
Sbjct:    2 SAQALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTGFPALKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGR 175          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: THIJ_ECOLI (Protein thiJ OS=Escherichia coli (strain K12) GN=thiJ PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 75/174 (43.10%), Postives = 101/174 (58.05%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASV--EDKPEILASRQIKLVADVLIDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKLSDQSEIENRVVVDG--NLITSRGPGTSMEFALAIVEKFFGR 649
            S   LV +A GSEE EAV  ID+L R    V  ASV  +    I  SR +KL+AD  + E A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +      T FP + +K+  +  ++ RVV D    L+TS+GPGT+++F L I++   GR
Sbjct:    2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGR 175          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PARK7_CHICK (Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 72/174 (41.38%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKLSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGR 649
            S + LV +A G+EEME V+  D++RRA   V VA +  K  +  SR + +  D  +++A K   YD+IVLPGG  GAQ  ++S  + ++LK Q+       AICA P  +L  HG+  G K    P+  +K+ + +     E+RV  DGN++TSRGPGTS EF LAIVE   G+
Sbjct:    3 SKRALVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDARKEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPTALLA-HGIGFGSKVITHPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGK 175          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PARK7_BOVIN (Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 73/174 (41.95%), Postives = 104/174 (59.77%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKL---SDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGR 649
            S + LV +A G+EEME V+ +D++RRA   V VA +  K  +  SR + +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +LK+Q++      AICA P  +L  H +  G K T  P+  +K+   S  S  ENRV  DG ++TSRGPGTS EFAL IVE   G+
Sbjct:    3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGK 175          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PARK7_HUMAN (Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 72/174 (41.38%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKLSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGR 649
            S + LV +A G+EEME V+ +D++RRA   V VA +  K  +  SR + +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P+  +K+ +       ENRV  DG ++TSRGPGTS EFALAIVE   G+
Sbjct:    3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGK 175          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PARK7_MESAU (Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 74/174 (42.53%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKL---SDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGR 649
            S + LV +A G+EEME V+ +DI+RRA   V VA +  K  +  SR + +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K+   S  S  E+RV  DG ++TSRGPGTS EFALAIVE   G+
Sbjct:    3 SKRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKKQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTALL-AHEIGFGSKVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGK 175          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PARK7_CERAE (Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 71/174 (40.80%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKLSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGR 649
            S + LV +A G+EEME V+ +D++RRA   V +A +  K  +  SR + +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P+  +K+ +       ENRV  DG ++TSRGPGTS EFALAIVE   G+
Sbjct:    3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTIAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGK 175          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PARK7_RAT (Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 74/174 (42.53%), Postives = 105/174 (60.34%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEA-AKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKL---SDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGR 649
            S + LV +A G+EEME V+ +DI+RRA   V VA +  K  +  SR + +  D  ++EA  +  YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T+ P+  +K+   S  S  E+RV  DG ++TSRGPGTS EFALAIVE   G+
Sbjct:    3 SKRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKTQGPYDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPTALL-AHEVGFGCKVTSHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGK 175          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PARK7_DANRE (Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 71/169 (42.01%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  152 LVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKLSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFG 646
            LV +A G+EEME V+ +D++RRA   V VA +  K  +  SR++ +  D  +++A K   YD+++LPGGL GAQ  ++S  +  +LK Q+       AICA P  +L  HG+  G   T  P   +K+         E RV  DGN+ITSRGPGTS EFAL IVE+  G
Sbjct:    7 LVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGPYDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGIAYGSTVTTHPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMG 174          
BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PARK7_MOUSE (Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 72/174 (41.38%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  140 SPQILVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKL---SDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGR 649
            S + LV +A G+EEME V+ +D++RRA   V VA +  K  +  SR + +  D  +++A     YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P+  +K+   S  S  E+RV  DG ++TSRGPGTS EFALAIVE   G+
Sbjct:    3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPTALLA-HEVGFGCKVTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGK 175          
The following BLAST results are available for this feature:
BLAST of DR908243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THIJ_SALTY7.224e-2843.10Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=... [more]
THIJ_ECOLI7.224e-2843.10Protein thiJ OS=Escherichia coli (strain K12) GN=t... [more]
PARK7_CHICK6.115e-2741.38Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1[more]
PARK7_BOVIN6.115e-2741.95Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1[more]
PARK7_HUMAN1.043e-2641.38Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2[more]
PARK7_MESAU1.362e-2642.53Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1... [more]
PARK7_CERAE1.362e-2640.80Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE... [more]
PARK7_RAT3.035e-2642.53Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV... [more]
PARK7_DANRE3.035e-2642.01Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1[more]
PARK7_MOUSE5.177e-2641.38Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16371 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908243 ID=DR908243; Name=DR908243; organism=Citrus sinensis; type=EST; length=684bp
GTTTGCCATTGCACTTGTCGAGCAGTTGTATGGGAAAGAGAGAGCTGATG
AAGTTTCTGGGCCACTGGTAATGCGTGCAAATCATGGAGATGAATACACT
ATTGCTGAATTCAATCCAATTCAGTGGACATTTGACAATTCTCCCCAAAT
TCTTGTGCCTATTGCAAATGGTTCAGAGGAGATGGAAGCTGTTATGATAA
TTGATATTCTGCGACGAGCTAAAGCAAATGTTGTAGTTGCATCAGTTGAG
GATAAACCAGAAATTCTGGCTTCTCGTCAAATTAAATTAGTGGCAGATGT
GCTCATTGATGAGGCGGCTAAACTCTCGTATGATTTAATTGTCTTGCCAG
GTGGACTTGGTGGCGCTCAAGCATTTGCGAAGTCAGAGAAATTGGTGAAT
ATGCTAAAGAAGCAAAAGGAATCAAATAGACCTTACGGTGCTATATGTGC
ATCCCCAGCTTTAGTGTTGGAGCCCCATGGCTTACTCAAGGGTAAAAAAG
CTACAGCTTTTCCTGTTATGTGCAACAAGCTGTCAGATCAGAGTGAAATC
GAAAACAGGGTTGTGGTTGATGGCAACCTCATCACCAGTAGAGGGCCAGG
AACTTCTATGGAGTTTGCACTGGCAATTGTGGAGAAGTTTTTTGGCCGCA
CAAGCACTTGAGCTTGCAAAGATAATGCTTTTCA
back to top