DR908231

Overview
NameDR908231
Unique NameDR908231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908231_ssr8 microsatellite DR908231_ssr8:8..19. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: IAR1_ARATH (IAA-alanine resistance protein 1 OS=Arabidopsis thaliana GN=IAR1 PE=2 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 4.572e-54
Identity = 124/233 (53.22%), Postives = 147/233 (63.09%), Query Frame = 2
Query:    2 LKDDDDLGKTQSESSSGTEGIVSDEVSEDSLNGDNLAQHETLLRRRKTTSVDGDYXXXXXXXXXXXXXXXXXXXXXPVQ---SASNLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMNSNGNSMLK--VLHPVDSLIWACLLPCIPL 685
            LKD+ D      +SSS      S++VS  S +          LR+RKT++ D                        P Q    +S+LVFGYLNLFSDGVHNFTDGMALGSAFL+YGSVGGWSRT+FLLAHE+PQE+GDFGILVRSGF+V+KALFFNFLS              G +PGQSSLIEGFTAGGFIYIAVAGVLAEMN++G S LK    H +  ++   +  CI L
Sbjct:  248 LKDEGDHNNLDQQSSSDAIVNSSEKVSGGSTDKS--------LRKRKTSASDAT-----DKSDSGTEITSDGKSDKPEQVETRSSSLVFGYLNLFSDGVHNFTDGMALGSAFLIYGSVGGWSRTMFLLAHELPQEIGDFGILVRSGFTVTKALFFNFLSALVALAGTALVLVWGNEPGQSSLIEGFTAGGFIYIAVAGVLAEMNNSGKSTLKNSACHLISLILGMSVALCISL 467          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: TG230_CAEEL (Putative protein tag-230 OS=Caenorhabditis elegans GN=tag-230 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  263 YLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPG------QSSLIEGFTAGGFIYIAVAGVLAEMNSNG--NSMLKVLHPVDSLI 655
            YLNL +D VHN TDG+A+G++F   G+  GW  TL +L HE+P EVGDF ILV+SGFS  +A+    ++                +PG       +S I  FTAGGFIYIA   V+ E+  +G  N++ KV     SL+
Sbjct:  238 YLNLVADFVHNVTDGLAIGASFSA-GNTLGWITTLTVLLHELPHEVGDFAILVQSGFSKYQAIRLQAVTALGAITGCVFSLLV-SNPGSLNNDADTSAIMPFTAGGFIYIATVSVVPELLESGDHNNLSKVAKMAQSLV 374          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: CSUP_DROME (Protein catecholamines up OS=Drosophila melanogaster GN=Catsup PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  254 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFL-SXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMNSNGNSMLKVLHPVDSLI 655
            + GYLNL +D  HNFTDG+A+G+++L   S+ G   T+ +L HE+P E+GDF IL++SG S  KA+    + +              G   G +  +  FTAGGFIYIA   VL E+      + + L  + +L+
Sbjct:  303 ISGYLNLAADFAHNFTDGLAIGASYLAGNSI-GIVTTITILLHEVPHEIGDFAILIKSGCSRRKAMLLQLVTALGALAGTALALLGAGGGDGSAPWVLPFTAGGFIYIATVSVLPELLEESTKLKQSLKEIFALL 436          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: KE4L_CAEEL (Putative Ke4-like protein tag-148 OS=Caenorhabditis elegans GN=tag-148 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  254 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQ-----DPGQSSLIEGFTAGGFIYIAVAGVLAEMNSNGN 616
            V  YLNL +D  HNFTDG+A+G++F+  G+  G    + +L HE+P E+GDF IL++SG+S  KA+    ++                     D   SS +  FTAGGFIYIA   V+ E+  N +
Sbjct:  313 VTAYLNLAADFTHNFTDGLAIGASFIA-GTTVGIVTMITVLVHEVPHEIGDFAILIQSGYSKKKAMLIQLVTALGALSGCVISLFSADADALADAAASSWVLPFTAGGFIYIATVSVIPELLENSS 437          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: FOI_DROME (Zinc transporter foi OS=Drosophila melanogaster GN=foi PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  263 YLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMNSNGNSM 622
            ++ +  DG+HNFTDGMA+G+AF      GG+S +L +  HE+P E+GDF IL+++G SV  A+++N L+              GQ    +  +    AG FIYIA+  ++ E++++  S+
Sbjct:  545 WMIIMGDGLHNFTDGMAIGAAFA-ENIAGGFSTSLAVFCHELPHELGDFAILIKAGMSVKSAVYYNLLTGVLSFIGMIFGIAFGQSQDVAQWMFAVAAGLFIYIALVDMMPEISASHKSL 663          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AA_MOUSE (Zinc transporter ZIP10 OS=Mus musculus GN=Slc39a10 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  263 YLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSL-IEGFTAGGFIYIAVAGVLAEM 601
            ++ +  DG+HNF+DG+A+G+AF   G  GG S ++ +  HE+P E+GDF +L+++G +V +A+ +N LS              GQ     +L I   TAG F+Y+A+  +L EM
Sbjct:  673 WMVIMGDGIHNFSDGLAIGAAFSA-GLTGGISTSIAVFCHELPHELGDFAVLLKAGMTVKQAIVYNLLSAMMAYIGMLIGTAVGQYANNITLWIFAITAGMFLYVALVDMLPEM 785          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AA_HUMAN (Zinc transporter ZIP10 OS=Homo sapiens GN=SLC39A10 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  263 YLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSL-IEGFTAGGFIYIAVAGVLAEM 601
            ++ +  DG+HNF+DG+A+G+AF   G  GG S ++ +  HE+P E+GDF +L+++G +V +A+ +N LS              GQ     +L I   TAG F+Y+A+  +L EM
Sbjct:  671 WMVIMGDGIHNFSDGLAIGAAFSA-GLTGGISTSIAVFCHELPHELGDFAVLLKAGMTVKQAIVYNLLSAMMAYIGMLIGTAVGQYANNITLWIFAVTAGMFLYVALVDMLPEM 783          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39A7_HUMAN (Zinc transporter SLC39A7 OS=Homo sapiens GN=SLC39A7 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15
Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  254 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVG-GWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEG--------FTAGGFIYIAVAGVLAEMNSNGN---SMLKVLHPVDSLIWACLL 670
            V GYLNL +D  HNFTDG+A+G++F   G  G G   T+ +L HE+P EVGDF ILV+SG S  +A+    L+                    S +  G        FTAGGFIY+A   VL E+    +   S+L+VL  +  +I   L+
Sbjct:  317 VSGYLNLAADLAHNFTDGLAIGASFR--GGRGLGILTTMTVLLHEVPHEVGDFAILVQSGCSKKQAMRLQLLTAVGALAGTACALLTEGGAVGSEIAGGAGPGWVLPFTAGGFIYVATVSVLPELLREASPLQSLLEVLGLLGGVIMMVLI 465          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39A7_PONAB (Zinc transporter SLC39A7 OS=Pongo abelii GN=SLC39A7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  254 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVG-GWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEG--------FTAGGFIYIAVAGVLAEMNSNGN---SMLKVLHPVDSLIWACLL 670
            V GYLNL +D  HNFTDG+A+G++F   G  G G   T+ +L HE+P EVGDF ILV+SG S  +A+    L+                    S +  G        FTAGGFIY+A   VL E+    +   S+L+VL  +  ++   L+
Sbjct:  317 VSGYLNLAADLAHNFTDGLAIGASFR--GGRGLGILTTMTVLLHEVPHEVGDFAILVQSGCSKKQAMRLQLLTAVGALAGTACALLTEGGAVGSEIAGGAGPGWVLPFTAGGFIYVATVSVLPELLREASPLQSLLEVLGLLGGVVMMVLI 465          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AC_MOUSE (Zinc transporter ZIP12 OS=Mus musculus GN=Slc39a12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  272 LFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEM 601
            L  D +HNF DG+ +G+AF       G + T+ +L HEIP E+GDF +L+ SG SV  A+  NFLS                DP     I   TAG F+Y+++ G+L EM
Sbjct:  543 LVGDSLHNFADGLVIGTAFSS-SLESGVTTTIAILCHEIPHEMGDFAVLLSSGLSVRTAILMNFLSALTAFAGLYIGLSVSADPRVQDWILTVTAGMFLYLSLVGMLPEM 651          
The following BLAST results are available for this feature:
BLAST of DR908231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
IAR1_ARATH4.572e-5453.22IAA-alanine resistance protein 1 OS=Arabidopsis th... [more]
TG230_CAEEL3.095e-1841.73Putative protein tag-230 OS=Caenorhabditis elegans... [more]
CSUP_DROME9.006e-1837.04Protein catecholamines up OS=Drosophila melanogast... [more]
KE4L_CAEEL5.838e-1738.10Putative Ke4-like protein tag-148 OS=Caenorhabditi... [more]
FOI_DROME7.624e-1735.83Zinc transporter foi OS=Drosophila melanogaster GN... [more]
S39AA_MOUSE1.878e-1536.84Zinc transporter ZIP10 OS=Mus musculus GN=Slc39a10... [more]
S39AA_HUMAN2.453e-1536.84Zinc transporter ZIP10 OS=Homo sapiens GN=SLC39A10... [more]
S39A7_HUMAN9.320e-1537.75Zinc transporter SLC39A7 OS=Homo sapiens GN=SLC39A... [more]
S39A7_PONAB1.217e-1437.09Zinc transporter SLC39A7 OS=Pongo abelii GN=SLC39A... [more]
S39AC_MOUSE1.590e-1439.09Zinc transporter ZIP12 OS=Mus musculus GN=Slc39a12... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16359 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908231 ID=DR908231; Name=DR908231; organism=Citrus sinensis; type=EST; length=689bp
ATTGAAGGATGATGATGATCTTGGAAAAACACAATCAGAATCTTCCAGTG
GAACTGAAGGAATCGTTTCAGATGAGGTGTCAGAAGACTCTTTGAATGGG
GATAATCTTGCTCAACATGAAACTCTTCTTCGGAGGAGAAAGACGACTTC
TGTTGATGGAGATTATAAATCAGATGTAGATGCTGCAGATGGCTCTTCCA
GTGACGTTAAATCCTCAGAAAAGAAAGAACCTGTTCAATCAGCTTCCAAT
CTCGTGTTTGGTTATCTCAATCTCTTTTCTGATGGTGTTCATAATTTTAC
CGATGGAATGGCTCTGGGAAGTGCTTTTCTACTTTATGGATCTGTTGGTG
GATGGTCTAGAACCTTGTTTTTGCTTGCCCATGAGATCCCTCAAGAGGTT
GGTGATTTTGGTATTTTGGTAAGATCAGGTTTCAGCGTATCAAAAGCTCT
CTTCTTCAACTTTCTCTCAGCTCTTGTGGCTCTGGCAGGAACTGCAATGG
CTTTGCTCTTAGGACAAGATCCAGGACAGTCATCTTTGATCGAGGGTTTT
ACCGCAGGCGGGTTTATATACATTGCAGTTGCTGGGGTGCTCGCAGAAAT
GAATAGCAATGGCAACTCAATGTTGAAAGTTCTGCATCCAGTTGACTCCC
TGATTTGGGCATGTCTGTTGCCTTGTATTCCCTTGTAGA
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