DR908229 | Citrus Genome Database

Overview


Name	DR908229
Unique Name	DR908229
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	689

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4622	contig	Csv1_Contig4622:155..845.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.390e-96
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS+KSFDNLNNWREEFLIQA+PSDP+  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFV 121

HSP 2 Score: 172.94 bits (437), Expect = 2.390e-96
Identity = 81/88 (92.05%), Postives = 87/88 (98.86%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 561
            PFVV+GNKID+DGGNSRVVSEKKARAWCA+KGNIPYFETSAKEGINVEEAFQ IAK+ALKSGEEEE+YLPDTIDVGNSSQPRS+GCEC
Sbjct:  119 PFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSSQPRSTGCEC 206

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.148e-90
Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSF+NLNNWREEFLIQA+PSDP+  P +
Sbjct:   20 GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFV 121

HSP 2 Score: 155.992 bits (393), Expect = 3.148e-90
Identity = 76/89 (85.39%), Postives = 80/89 (89.89%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV-GNSSQPRSSGCEC 561
            PFVVLGNKIDVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NV++AFQCIAKNAL +  EEEIYLPDTIDV G   Q RSSGCEC
Sbjct:  119 PFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNEPEEEIYLPDTIDVAGGGRQQRSSGCEC 207

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.551e-89
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121

HSP 2 Score: 145.976 bits (367), Expect = 1.551e-89
Identity = 69/87 (79.31%), Postives = 78/87 (89.66%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTID-VGNSSQPRSSGC 555
            PFV+LGNK+DVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NVE+AFQCI KNALK+  EEE+Y+PDT+D VG +   RSSGC
Sbjct:  119 PFVLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALKNEPEEELYVPDTVDVVGGNRAQRSSGC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.972e-89
Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVN+KFSNQYKATIGADFLTKEVQF+DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV+DVN MKSFDNLNNWREEFLIQASPSDP+  P +
Sbjct:   20 GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121

HSP 2 Score: 151.369 bits (381), Expect = 9.972e-89
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQP-RSSGCEC 561
            PFVVLGNK+DVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NV+ AF+CIA+NALK+  EEEIYLP+TIDV +  +P RS+GCEC
Sbjct:  119 PFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNEPEEEIYLPETIDVASGGRPQRSTGCEC 207

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.927e-85
Identity = 90/102 (88.24%), Postives = 96/102 (94.12%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQ+VNKKFSNQYKATIGADFLTKE+QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL YDVN MKSF++LN WREEFLIQASP+DPD  P +
Sbjct:   20 GKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPFV 121

HSP 2 Score: 144.436 bits (363), Expect = 4.927e-85
Identity = 68/89 (76.40%), Postives = 79/89 (88.76%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPR-SSGCEC 561
            PFV+LGNKIDVDGG+ RVVSEKKA+AWC SKGNIPYFETSAK+G NVEEAFQCIAKNA+++  EEE YLPDTID+  S++P+ SS CEC
Sbjct:  119 PFVLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIAKNAIQNEPEEETYLPDTIDMAGSTRPQSSSACEC 207

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.144e-72
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYV KKF+ +YKATIGADFLTKE++ +D+  T+QIWDTAGQERFQSLG AFYRGADCCVLV+DVN+ KSFD+L+NWR+EF+IQA P DPD  P +
Sbjct:   20 GKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFM 121

HSP 2 Score: 122.094 bits (305), Expect = 9.144e-72
Identity = 56/87 (64.37%), Postives = 74/87 (85.06%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVG-NSSQPRSSGC 555
            PF+VLGNKID +GG+SR VSEKKA+AWCASKG+IPYFETSAKE INVE AF CI +NAL++ +EEE+++PD +D+   ++Q + +GC
Sbjct:  119 PFMVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFMPDAVDMNTTATQRKRAGC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.420e-69
Identity = 76/102 (74.51%), Postives = 91/102 (89.22%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYV KKF+ +YKATIGADFLTKE++ +D+  T+QIWDTAGQERFQSLG AFYRGADCC+LV+DVN+ KSFD+L+NWR+EF+IQA PSDPD  P +
Sbjct:   20 GKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFV 121

HSP 2 Score: 114.39 bits (285), Expect = 1.420e-69
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID  G N R V+EKKA+AWCASKG+IPYFETSAKE INVE AF CI +NAL++ +EEE+++PD +D+  S+  R  G  C
Sbjct:  119 PFVVLGNKIDEVGVN-RQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFVPDAVDMNTSATQRKRGGCC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.020e-68
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP   P +
Sbjct:   20 GKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFI 121

HSP 2 Score: 108.997 bits (271), Expect = 2.020e-68
Identity = 53/89 (59.55%), Postives = 65/89 (73.03%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL-PDTIDVGNSSQPRSSGCEC 561
            PF++LGNK+D+DGGNSRVVSEKKAR WCA KGNI YFETSAKE  NV+++F CI K AL +  +++IY  PDT     S   +  GC C
Sbjct:  119 PFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANERDQDIYFQPDT----GSVPEQRGGCAC 203

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.635e-68
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKE+  +DR+ T+QIWDTAGQERFQSLGVAFYRGADCCVL YDVN  K+F+NL++WR+EFLIQA P DPD  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFV 121

HSP 2 Score: 104.375 bits (259), Expect = 2.635e-68
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 555
            PFVVLGNKID++  N RVVS+K+A +WC SKGNIPYFETSAKE INVE+AFQ IA+NA+K  +     +P  I V    QP  SGC
Sbjct:  119 PFVVLGNKIDLE--NQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLEDGLVFPIPTNIQVIPEPQPAKSGC 202

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.060e-66
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

HSP 2 Score: 100.138 bits (248), Expect = 9.060e-66
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ I +NALK   E E+Y     P  +D  + ++P + GC C
Sbjct:  119 PFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIVRNALKQETEVELYNEFPEPIKLDKNDRTKPSAEGCSC 207

The following BLAST results are available for this feature:

BLAST of DR908229 vs. ExPASy Swiss-Prot

BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB7_PEA	2.390e-96	93.14	Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=...	[more]
RAB7_PRUAR	3.148e-90	91.18	Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ...	[more]
RAB7_CENCI	1.551e-89	96.08	Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2...	[more]
RAB7_GOSHI	9.972e-89	91.18	Ras-related protein Rab7 OS=Gossypium hirsutum GN=...	[more]
RAB7_MESCR	4.927e-85	88.24	Ras-related protein Rab7A OS=Mesembryanthemum crys...	[more]
YPTC5_CHLRE	9.144e-72	74.51	GTP-binding protein YPTC5 OS=Chlamydomonas reinhar...	[more]
YPTV5_VOLCA	1.420e-69	74.51	GTP-binding protein yptV5 OS=Volvox carteri GN=YPT...	[more]
RAB7_ARATH	2.020e-68	78.43	Ras-related protein Rab7 OS=Arabidopsis thaliana G...	[more]
RAB7A_DICDI	2.635e-68	79.41	Ras-related protein Rab-7A OS=Dictyostelium discoi...	[more]
RAB7A_BOVIN	9.060e-66	78.43	Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC