DR908220

Overview
NameDR908220
Unique NameDR908220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA 269
            TINASVRKTNRLVTVEEGFPQHGVGAEIC SVIEESF YLDA VERI GADVPMPYA NLER+ VP VEDIVRAAKRAC+RSVP+AAAA
Sbjct:  271 TINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRACHRSVPLAAAA 359          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 75/82 (91.46%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 248
            TINASVRKT+RLVTVEEGFPQHGV AEICASV+EESFSYLDAPVERIAGADVPMPYAANLER+A+PQ+EDIVRA+KRACYRS
Sbjct:  281 TINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRACYRS 362          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 245
            T+  SV+KT RLVTVEEG+PQ  VG EI   V++++F YLDAP+  IAG DVPMPYAANLE++A+P V ++V A K  CY+
Sbjct:  380 TVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVCYK 460          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.615e-22
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 248
            TI  S++KTN+LVTVEEG+ Q G+GAEI A ++E +F YLDAP+ERI GADVPMPYA+NLE  A+ Q ++IV AAKR   R+
Sbjct:  274 TIVNSLKKTNKLVTVEEGWAQSGIGAEISALMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQRN 355          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 251
            +I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY S+
Sbjct:  244 SIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYSI 326          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 251
            TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+P+A NLE++A+P   D++ A K+ CY SV
Sbjct:  244 TIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPFAVNLEKLALPSESDVIEAVKKVCYYSV 326          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 251
            TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G D+P+PYA NLE +A+P   D++ A K+ CY S+
Sbjct:  244 TIIESVKKTNRLVVVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDLPLPYAVNLETLALPSESDVIEAVKKVCYYSI 326          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 43/79 (54.43%), Postives = 61/79 (77.22%), Query Frame = 3
Query:   15 SVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 251
            SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY ++
Sbjct:  248 SVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYTI 326          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 233
            TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  278 TIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 233
            TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  278 TIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
The following BLAST results are available for this feature:
BLAST of DR908220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ODPB_PEA1.579e-3888.76Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ARATH5.079e-3791.46Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME3.533e-2259.26Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI4.615e-2262.20Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICPR2.532e-2054.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE2.532e-2055.42Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN4.319e-2054.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY7.368e-2054.43Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PONAB7.368e-2062.82Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN7.368e-2062.82Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16348 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908220 ID=DR908220; Name=DR908220; organism=Citrus sinensis; type=EST; length=691bp
CCACAATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAA
GAAGGGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTAT
TGAGGAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAG
CTGATGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCA
CAGGTTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGT
GCCAATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGT
CAGATCCTGGTTGGTTTTATTTGCACAAACTATTATCTATTTATTAGTTT
TATAAGGCTTTTTTTTCAGCTGGTGGCTTAAGGTCAATGCTATGGTTCTG
AGTTTCAATTTGCCTATTTATTTAACAACTATTGGATCCTTTCCAGGAAC
AATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTTTGGGGGAAT
TGATCATGAAATAATTGGAGATTGTTGATGACAGCAGGAAATTTTGTGGC
TCAGTTTTCTCTTGTTAATGTGGAAAATCAACAAGAAACCAGAGTTTTAT
TGTTTGATTATCAATGTACTGCTACAAGTTTTGTCAGTTCCATGATATTT
CATTAAATGGTGCGTGAATCTGAGTCGTTTGAAAAAAAAAA
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