DR908209

Overview
NameDR908209
Unique NameDR908209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.672e-60
Identity = 129/219 (58.90%), Postives = 149/219 (68.04%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVS-------------------------NAYGEEGQSSESVNNICIS 673
            MAREKIQIKKIDN+TARQVTFSKRRRG+FKKAEELSVLCDADVALIIFS+TGKLF+YSSSSMK+ILE+  +HSKNLE++DQPS+ELQL+EN+NYS L KE +EKSH LRQMRGEE+ G               GL RV            N+L ++G  LMEENE+LRQQV E+S                         N   E+GQSSESV N C S
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNNNNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNPCNS 219          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 119/214 (55.61%), Postives = 148/214 (69.16%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVS--------------NAYG----------EEGQSSESVNN 661
            MAREKIQI+KIDNATARQVTFSKRRRG+FKKAEELSVLCDADVALIIFS+TGKLFE+ SSSMKE+LE+H + SKNLE++DQPS+ELQL+EN++++ + KE A+KSH LRQMRGEE+ G               GL RV            +EL ++G  LM+EN+RLRQQ  +++              +A+G          EEGQSSES+ N
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITN 214          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.694e-43
Identity = 100/197 (50.76%), Postives = 130/197 (65.99%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVSNA---------YGEEGQSSESV 655
            MARE+ +IK+I++A ARQVTFSKRRRG+FKKAEELSVLCDADVALI+FS+TGKL  ++SSSM EI++K+  HS NL + +QPS++L  LE++ Y+ L ++ AE S  LRQMRGEE+ G               GL RV            +EL R+   L EEN +LR QV+++S A         +  EGQSSESV
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLN-LEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQVVDTENFVTEGQSSESV 196          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.478e-39
Identity = 99/220 (45.00%), Postives = 130/220 (59.09%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVD-QPSVELQL---------------------LENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEV----------SNAYGEEGQSSESV 655
            MARE+ +I++I++A ARQVTFSKRRRG+FKKAEEL+VLCDADVAL++FS+TGKL +++SS+M EI++K+  HSKNL + D QPS++L                       LE++  S L ++ AE S  LRQMRGEE+ G               GL RV            +EL R+G  L EEN RLR Q+ +V           N   E+GQSSESV
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSESV 220          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.578e-38
Identity = 90/201 (44.78%), Postives = 124/201 (61.69%), Query Frame = 2
Query:   98 REKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQV-------------AEVSNAYGEEGQSSESVNN 661
            RE+I I++IDN  ARQVTFSKRRRG+FKKAEELS+LCDA+V L++FSATGKLF+++S+SM++I++++  HSK L+R +   ++LQ  +++  + L +E AE S  LRQMRGEE+H                GLG V            + L R+   L+EEN RL++Q+                S    EEGQSSESV N
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEEMQPGPDSEIVYEEGQSSESVTN 222          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 74/193 (38.34%), Postives = 111/193 (57.51%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFK-EAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERL-------RQQVAEV-SNAYGEEGQS 643
            M R KI I++IDN+T+RQVTFSKRR GIFKKA+EL++LCDA+V L+IFS+TG+L+EYSS+SMK +++++       + V  P+ EL+  +    S+  +    +++H  RQ+ GE++ G              + L  V            +EL R+G L+ +EN  L       RQ+ AE+    Y  EG S
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENH--RQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAELYKKIYETEGPS 191          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 62/176 (35.23%), Postives = 108/176 (61.36%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKE--AAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEV 613
            M R KI I++ID++T+RQVTFSKRR+G+ KKA+EL++LCDA+V LIIFS+TGKL++++SSSMK +++++       +++  P+ E++  +    ++L +E  A +++H  RQM GE+++G              + L  +             EL ++  L+ +EN  L ++V  +
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASEVKFWQ-REAAVLRQELHALQENH--RQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRI 173          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 64/170 (37.65%), Postives = 93/170 (54.71%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQ 601
            M R KI IK+IDN   RQVTFSKRR G+ KKA EL++LCDADV LI+FS TG+L+++SSSSMK I+E+++   +   R+  P  E +  +    + L ++     H  RQ+ GEEI                + L  +             +L  +G L+ +EN  LR++
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQ-REVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKK 169          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23
Identity = 66/178 (37.08%), Postives = 96/178 (53.93%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLL----RQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAE 610
            M R ++Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+VAL++FS  GKLFEYS+ S M++ILE++  +S    ++  P  ++    N N+SM +     K  LL    R   GE++                  L  +            NEL R+ K + E+N  L +Q+ E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDV----NTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKE 174          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.545e-23
Identity = 65/178 (36.52%), Postives = 96/178 (53.93%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLL----RQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAE 610
            M R ++Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+VAL++FS  GKLFEYS+ S M++ILE++  +S    ++  P  ++    N N+SM +     K  LL    R   GE++                  L  +            NEL ++ K + E+N  L +Q+ E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDV----NTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKE 174          
The following BLAST results are available for this feature:
BLAST of DR908209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
JOIN_SOLLC5.672e-6058.90MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
SVP_ARATH3.221e-5555.61MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD22_ORYSJ3.694e-4350.76MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD55_ORYSJ2.478e-3945.00MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MAD47_ORYSJ3.578e-3844.78MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD27_ORYSJ1.080e-2638.34MADS-box transcription factor 27 OS=Oryza sativa s... [more]
AGL21_ARATH1.459e-2335.23Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD25_ORYSJ1.906e-2337.65MADS-box transcription factor 25 OS=Oryza sativa s... [more]
AP1_SINAL2.489e-2337.08Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH5.545e-2336.52Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16337 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908209 ID=DR908209; Name=DR908209; organism=Citrus sinensis; type=EST; length=695bp
CAATATACAAACTCGAGAGCTTTTTATTTCATATAGTTATTCTTTTTCAG
GAAGATCACAGCAGTAACAGCTAGCAAGCAAGCGCAAAGAAATGGCGAGA
GAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGGCAAGTCAC
TTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGAGCTTTCTG
TTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCACAGGCAAG
CTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAAAAGCACCG
TGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGTTGAGTTGC
AGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAGCTGCCGAA
AAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCATGGATTAAG
TTTAGAAGAATTGCAGAGGCTTGAAAGGTCTCTTGAAGTTGGATTGGGAC
GAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTAATGAACTC
CCAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTAAGACAGCA
AGTGGCGGAGGTATCAAATGCATACGGTGAAGAAGGCCAGTCCTCAGAGT
CTGTTAATAATATATGCATTTCATCAACGCGCCTCCCCTGAATCT
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