DR908206

Overview
NameDR908206
Unique NameDR908206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7056 contig Csv1_Contig7056:678..1372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 443.351 bits (1139), Expect = 5.568e-124
Identity = 209/231 (90.48%), Postives = 220/231 (95.24%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGI 693
            DGQG LWWQ+FH GKLKYTRPYLIE MY+ +IQIS+LTLLNSPSWNVHPVYS NIL+QGITI+APV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSA IALGSEMSGGIQDVRAEDI AIN+ESG+RIKT +GRGGYVKDIYVRGMTM TMKWAFWMTGNYGSHADNHYDPKA PVIQGINYRD+VA+NVSMAARLEGI
Sbjct:  179 DGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGI 409          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 71/207 (34.30%), Postives = 103/207 (49.76%), Query Frame = 1
Query:   97 QISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG--WDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKT-AVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYD----------PKALPVIQGINYRDIVADNVSMAA 678
            Q+   T+ N+ SW +HP    ++     TIIAP  SPNTDG NP+SC N  I       GDDC+AVK+G    +    +   T+ + +R    + P    + +GSEMSGG+ DV  ED   I T+ G+R+KT A   GG V +I +R + +  ++ A     +Y   AD H D              P + GI   D+   N++ AA
Sbjct:   34 QLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRH-CLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDVEIRNLAHAA 239          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 67/211 (31.75%), Postives = 113/211 (53.55%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSE-MSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNY-GSHADNHYDPKALPV 624
            +GQG+ WW+  HKG    +RP  ++F   +N+++S LT L+SP  ++H    + + +  + I AP +SPNTDGI+  + +N  I+DC I +GDDC+A+ SG           T  + I  + C   +  +I +LG +  +  +++V  ++     T +G RIKT  G  GY + I   G+T+  ++    +   Y G  +DN  D K+  V
Sbjct:  124 NGQGSSWWE--HKG----SRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAV 317          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 69/238 (28.99%), Postives = 112/238 (47.06%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYT----------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMS-GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAA 678
            DGQG  WW     G+ K            RP  I+  Y+ ++ +  LTL+NSP +++       + +QG+ I AP  SPNTDGI+  +     IE C I +GDDC+A+ +G           +  + I+ L C   +  +I +LG + S   +  V     K I+T++G+RIKT  G  G    I    + M   +    +   Y + A    + ++   IQG+ Y++I   + + AA
Sbjct:  157 DGQGQQWWA----GQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAA 379          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 70/234 (29.91%), Postives = 110/234 (47.01%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYT------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMS-GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAA 678
            DGQG  WW    K     T      RP  I+  ++ ++ +  LTL NSP +++       + +QGI I AP  SPNTDGI+  +     IE C I +GDDCVAV +G           +  + I+ LTC   +  +I +LG   S   +  V  +  K I+T++G+RIKT  G  G    I    + M   +    +   Y + A    + ++   IQ + +++I   + + AA
Sbjct:  158 DGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAA 380          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 62/228 (27.19%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 DGQGALWWQQF---HKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGG-IQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVS 669
            DG G  WWQ     +K K     P  + F  + ++ + +L + N+    +     SN+ V  + + AP  SPNTDGI+  +  N R+ +  I +GDDC++++SG           ++ + I  +TC   +  +I +LG + S   +  V  +  K   T++GVRIKT  G  G   +I  + + M  +K    +  +Y   +    +  A+ V + + YRDI   + S
Sbjct:  169 DGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG-----------SQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSAVQV-KNVVYRDISGTSAS 384          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 69/238 (28.99%), Postives = 111/238 (46.64%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYT----------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMS-GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAA 678
            DGQG  WW     G+ K+           RP  I+F ++  + I  L L+NSP +++       + + GI+I AP  SPNTDGI+  +  N  ++   I +GDDCVA+ +G           +  +VI  L C   +  +I +LG E S   +  V     K I+T++G+RIKT  G  G    I    + M   +    +   Y + A    + ++   IQ + Y++I   + + AA
Sbjct:  157 DGQGKQWWA----GQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAA 379          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 58/222 (26.13%), Postives = 103/222 (46.40%), Query Frame = 1
Query:    1 DGQGALWWQ---QFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGG-IQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDI 651
            +G G  WWQ   +  K K     P  +      N+ + +L + N+    +     + + V  + I AP  SPNTDGI+  +  N R+ +  I +GDDC++++ G           T+ L I  LTC   +  +I +LG + S   +  +  +  K   +++GVRIKT  G  G  K+I  + + M  +K    +  +Y    D   D ++   ++ + Y++I
Sbjct:  169 NGNGKTWWQNSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG-----------TQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDY-CDKDKCEDQESAVQVKNVVYKNI 378          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 57/232 (24.57%), Postives = 105/232 (45.26%), Query Frame = 1
Query:    1 DGQGALWWQ---QFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALG-SEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDI---VADNVSM 672
            +G G +WWQ   + +K       P  + F  + ++ + +L + N+   +V      N+    + + AP  SPNTDGI+     N  I  C I +GDDC+++ +G           ++++ +  +TC   +  +I +LG       + DV     K   T +GVRIKT  G  G   +I  + + MH ++    +  NY        +  +   ++ + Y++I    A NV++
Sbjct:  188 NGNGKIWWQNSCKTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNG-----------SRKVRVNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAI 408          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 55/233 (23.61%), Postives = 104/233 (44.64%), Query Frame = 1
Query:    1 DGQGALWWQ---QFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGG----IQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAA 678
            +G G +WW    + +K       P  + F    N+++++L   N+   ++     +N++   + I A   SPNTDG++  +    +I D  I +GDDC+++ SG           ++ +    +TC   +   I++GS  SG     + +V   + K I  E+GVRIKT  G  G   +I    + M  +K+   +  NY    +      +   ++ + Y +I   + +  A
Sbjct:  175 NGNGQVWWPSSCKINKSLPCRDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSG-----------SQNVQATNITCGPGHG--ISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVA 394          
The following BLAST results are available for this feature:
BLAST of DR908206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGLR_VITVI5.568e-12490.48Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
PGLR_RHIRD5.925e-2534.30Polygalacturonase OS=Rhizobium radiobacter GN=pgl ... [more]
PGLR3_ARATH8.007e-2231.75Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_CHAOB4.858e-1928.99Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR2_JUNAS1.197e-1729.91Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
ADPG2_ARATH2.666e-1727.19Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR2_CRYJA4.547e-1728.99Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
ADPG1_ARATH1.238e-1426.13Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]
PGLR_ACTDE2.758e-1424.57Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
PGLR_SOLLC8.026e-1423.61Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16334 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908206 ID=DR908206; Name=DR908206; organism=Citrus sinensis; type=EST; length=695bp
GACGGTCAGGGTGCACTTTGGTGGCAGCAATTCCACAAGGGCAAGCTAAA
ATACACTCGGCCTTACCTGATTGAATTCATGTACACTGACAATATCCAAA
TCTCAAGTCTAACGCTGCTGAATTCACCATCATGGAATGTTCATCCTGTT
TACAGCAGTAATATTCTCGTGCAAGGGATTACCATCATTGCCCCTGTTAC
ATCTCCAAACACAGATGGAATCAACCCAGATTCTTGCACCAATACTAGAA
TTGAAGACTGCTACATAGTCTCTGGAGATGATTGTGTGGCAGTAAAAAGC
GGATGGGACGAGTATGGAATTGCATATGGAATGCCCACAAAACAACTAGT
CATCAGACGGCTGACATGCATTTCACCGTACAGTGCCACCATCGCATTAG
GCAGCGAGATGTCAGGTGGGATTCAAGACGTCAGAGCTGAAGACATCAAA
GCCATCAATACTGAATCTGGAGTTAGAATCAAAACTGCCGTAGGCAGAGG
AGGGTATGTTAAAGACATTTACGTAAGAGGAATGACCATGCACACAATGA
AATGGGCCTTTTGGATGACTGGCAATTATGGATCGCATGCCGATAATCAC
TATGATCCAAAGGCTCTGCCCGTGATTCAAGGAATTAATTATAGGGACAT
TGTGGCGGATAATGTGTCCATGGCTGCTAGATTAGAGGGAATTTC
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