DR908198

Overview
NameDR908198
Unique NameDR908198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:250..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908198 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 255
            +PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   64 NPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of DR908198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC7.304e-2355.29Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16326 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908198 ID=DR908198; Name=DR908198; organism=Citrus sinensis; type=EST; length=697bp
TCTCCTTTACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTCTGCTT
GTTTGAGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGAC
TAGCTAAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCT
CTGCGTGATCGGGCCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAG
TGGGTACTTTGCCTTCATTGTCTACGACAAGTCCACCTCCACCTTGTTTG
TGGCTTCTGACCAATTTGGTAAGGTTCCTCTTTATTGGGGAATCACTGCT
GATGGACATGTTGCCTTTGCTGATGATGCTGACTTGCTCAAAGGTGCTTG
CGGCAAGTCACTTGCTTCTTTCCCTCAAGGTTGTTTCTTCTCAACAGCAG
TTGGAGGACTGAGAAGCTTTGAGAATCCAAAGAACAAGATCACTGCAGTT
CCTGCTGCGGAAGAAGAGATCTGGGGTGCTATCTTTAAGGTGGAAGGGCC
AGCAGTTCTTGCAGCCACAGAGTAGAAGGCTAGAAGATATTTCTTCTCGA
CTTGAGATATTAGCCAACAGTTAAAAATCGGCGGTTTGGGGGAAAAAAAG
TTTGTGGGGATGCAAGCTGCAAGAGGGTCCATGTGAATAACAAAATGAGT
GTAGCAAAATATCAACTGGAATGGAAATAGTGTATGCTTGTGAGAAT
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