EY680400

Overview
NameEY680400
Unique NameEY680400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680400 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -3
Query:   97 VKHVSLNCSNLEFLVVMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLFMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 360
            V+H++  C NLEF+ +MTIG    D +  P  +F+ L   R E+CK L IP +Q +L MGMS DF+ A+E+GSTNVRIGSTIFG R+Y KK
Sbjct:  165 VEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of EY680400 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = -3
Query:   97 VKHVSLNCSNLEFLVVMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLFMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 360
            V+H+  +C +LEF+ +MTIG    D +  P  +F+ L   R E+C+ LGIP EQ +L MGMS DF+ AIE+GSTNVRIGSTIFG R+Y KK
Sbjct:  165 VEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of EY680400 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -3
Query:   97 VKHVSLNCSNLEFLVVMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLFMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 360
            V+H++  C +LEF+ +MTIG    D +  P  +F+ L   R E+C+ LG P EQ +L MGMS DF+ AIE+GSTNVRIGSTIFG R+Y KK
Sbjct:  165 VEHINAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of EY680400 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.340e-18
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = -3
Query:   97 VKHVSLNCSNLEFLVVMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLFMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 360
            V+H++  C NLEF+ +MTIG    D +  P  +F+ L   R E+CK L IP +Q +L MGMS DF+ AIE+GSTNVRIGS IFG R+Y KK
Sbjct:  165 VEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGERDYSKK 255          
BLAST of EY680400 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = -3
Query:   97 NCSN-LEFLVVMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLFMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 342
            NC N L FL +MTIG P+ T    +FK L  C++ + K L IP +  +L MGMS DFE AIE GST+VR+GS IFG R+Y  K
Sbjct:  172 NCKNSLNFLGLMTIGNPNATPDQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFGERDYSNK 254          
The following BLAST results are available for this feature:
BLAST of EY680400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PROSC_HUMAN5.126e-1953.85Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE1.948e-1854.95Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN1.948e-1853.85Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB4.340e-1853.85Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI3.110e-1653.01Proline synthetase co-transcribed bacterial homolo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-F09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680400 ID=EY680400; Name=EY680400; organism=Citrus sinensis; type=EST; length=839bp
CCACGCGTCCGCTACTATACTCTAGTTTCAGTACATTAAGATAAATACAT
AACAATAGCCAACGTTTTCAGAACAGGTGAAAAAAAAAGTTTAGTTCTTC
TTCGGATATTCCCTTGCACCAAATATTGTGGATCCAATCCTGACATTGGT
GCTCCCCATTTCAATAGCAAGCTCGAAGTCACCAGACATTCCCATAAACA
GATCACATTGCTCTTCTGGTATTCCAAGAGCCTTGCATACCTCACTTCTG
CATTTTGCTAATGTCTTGAAGTTCTCCGGGGTCGATGTGTAATCTGGCAT
CCCAATTGTCATTACGACCAAAAACTCTAAATTCGAACAGTTTAGACTAA
CATGTTTCACAAATTTCCAGAACACCCGGAAAGGCTCAGCTCTCCCCCGA
ACTCACATAGGGCGTTTAGGGGGGGAACGTGGAGAAGCGGTAAAAAGAAT
TCTTCTCTTGGCTGGTGCTGCCTCCAACCTCCTCCAAAGTGAAAAAACAT
CGTAGACGCAAGTAATACGAGCTGAAACGCAAGTTCAGTCCACCTTTAGG
CCCAAAGGCAAGTCAAAAACTGATACACCTATAAAAAAAAAAGTCTCGAG
ACAAATGACGCTCGATCCACCCCGACTAACCTAGAACCGCCGACACTGCC
ACAGATGCCAAACCAGCTAATAACCCGGAACCAACACATCTCACACTACA
CAACAGCCATCTCTTCACCCTAAGAATTCCCTCAACATCACCCCACATAT
GCCACCACTCTCCGTTCACAATCCCTCACCTGACACACAATTCACCAACA
CTTCAACCCACCACCACCTAGAGGTTCACCCACGCATCA
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