DR908168

Overview
NameDR908168
Unique NameDR908168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:1027..1732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.587e-73
Identity = 134/202 (66.34%), Postives = 163/202 (80.69%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRR 608
            KDDLPDEL+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+EGYKN+MENC  NA  LREGLEKTGRF I+SK++GVPLVAFSLKD+  H  FEISE LR+FGWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+ ++
Sbjct:  293 KDDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK 493          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.825e-73
Identity = 132/209 (63.16%), Postives = 166/209 (79.43%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGRRAGAC 620
            K+DLPDELVFHINYLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFEGYKN+M+NC+ NA+ L EG+ K GRF+I+SKDVGVP+VAFSL+DSS +TVFE+SE LR+FGWIVPAYTMP +AE++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++    + +G C
Sbjct:  294 KEDLPDELVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 5.249e-69
Identity = 132/211 (62.56%), Postives = 165/211 (78.20%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRETQEEVTRHWKRFVKGRR--AGAC 620
            K+DLP+EL+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC  N   LREGLEKT RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+V++E++ LPSRV  K + +    +E+  D     +KKS  + Q ++   WK+FV  R+  +G C
Sbjct:  293 KEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC 502          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.402e-68
Identity = 131/207 (63.29%), Postives = 163/207 (78.74%), Query Frame = 3
Query:    6 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRRA--GAC 620
            +DLP+EL+FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFEGYKN+MENC+ N   L+EG+EKT RF I+SKD GVP+VAFSLKD S H  FEISE LR+FGWIVPAYTMPA+A+++ VLRVV+REDFSR+L ERL++ I +VL E+++LPS++S K    I  + E   +K ++K   E   EV   W++FVK R+   G C
Sbjct:  293 EDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMG--IEGIAENVKEKKMEK---EILMEVIVGWRKFVKERKKMNGVC 494          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 449
            K  LP+EL+F ++YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L E +EKTG FEI++    +P+V + LK++S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E +
Sbjct:  293 KKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKENSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAI 443          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 60/154 (38.96%), Postives = 96/154 (62.34%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 458
            K  LP+EL+F ++YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L + +EKTG FEI++    +P+V + LK+ S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E ++ +
Sbjct:  293 KKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKEDSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIEAL 446          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 58/153 (37.91%), Postives = 95/153 (62.09%), Query Frame = 3
Query:   12 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 464
            LP+EL+F ++YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P N EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  294 LPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLADRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 63/170 (37.06%), Postives = 100/170 (58.82%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES---LPSRVSTKTAH 497
            K+ LP+ELVF ++YLG   PT  +NFS+ +SQII QYY F+R G+EGY+ I       A  L + + +TG FEI +    +P+V + LKD +  A T++++++ L+  GW VPAY +P    N  + R V R D  +++V    + + E ++E+ +   L   V+T   H
Sbjct:  289 KEYLPEELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDDANVAWTLYDLADRLQMKGWQVPAYPLPKEMGNTIIQRYVCRGDLGQNMVTAFKNDLSESIEELNNAHILYHDVNTSKTH 458          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 57/153 (37.25%), Postives = 95/153 (62.09%), Query Frame = 3
Query:   12 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 464
            LP+EL+F ++YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P + EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  294 LPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDDANVNWTLYDLADRLQMRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 461
            K+ LP EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + LKD      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + L  +E
Sbjct:  294 KEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALHNLE 448          
The following BLAST results are available for this feature:
BLAST of DR908168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_PETHY4.587e-7366.34Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE_SOLLC7.825e-7363.16Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE1_ARATH5.249e-6962.56Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH3.402e-6863.29Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_LACLM3.113e-2940.40Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA1.183e-2838.96Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEB_LISIN2.018e-2837.91Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEA_LISMO5.871e-2837.06Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEB_LISMO7.667e-2837.25Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEC_LISIN1.308e-2738.71Probable glutamate decarboxylase gamma OS=Listeria... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16296 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908168 ID=DR908168; Name=DR908168; organism=Citrus sinensis; type=EST; length=705bp
CCAAAGATGACTTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGA
TCTGATCAACCGACTTTCACCCTCAACTTCTCAAAAGGCTCCAGTCAAAT
AATTGCTCAATATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGA
ACATTATGGAAAATTGCATGGGGAATGCTAGAGCGCTAAGAGAAGGATTA
GAGAAAACAGGGCGCTTTGAAATTCTCTCCAAGGATGTTGGCGTACCCTT
AGTAGCCTTTTCTTTGAAGGACAGCAGCGCACACACCGTGTTTGAGATAT
CCGAGGGTTTGAGAAAGTTTGGGTGGATAGTTCCGGCCTATACAATGCCT
GCTAATGCTGAAAATGTGGCGGTTCTTCGGGTGGTTGTCAGGGAGGATTT
CAGCCGTAGCTTGGTGGAAAGACTCATCTCACACATCGAGGAAGTTTTGA
AGGAAATTGAATCGCTTCCAAGTCGTGTATCCACAAAAACTGCCCATGTC
ATACCCATGGTCAACGAAACTCAGGGTGATAAGCCACTTAAGAAGAGTGT
GAGGGAGACTCAGGAGGAAGTCACCAGGCACTGGAAGAGGTTCGTGAAAG
GCCGGAGAGCTGGAGCATGCTGAGGTTCCAACATAAGATGAGACAAGATT
TGTATGCTTGTTTGAATATTAAAGCTATTGCTTCTTCCTGTTTTCTGTAT
ATTCG
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