DR908165

Overview
NameDR908165
Unique NameDR908165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2199 contig Csv1_Contig2199:18..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908165 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 3
Query:   96 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 437
            K K E  +     A  K+ A  KA + + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D              ++YEK M AYN
Sbjct:    5 KSKTESKRADPKLAVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN 113          
BLAST of DR908165 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  114 VKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 437
            +K  + +A    K  +K   +  K+TK    A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT                +YEK + AYN
Sbjct:    1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYN 105          
BLAST of DR908165 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 54/126 (42.86%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   63 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 437
            MK  + KGA K D    VK                S+ + K  K  K  A KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++              L+Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYN 110          
BLAST of DR908165 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  126 EDRAAGKRKAVLKASRSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 437
            E + A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++               +YE  + AYN
Sbjct:    9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYN 114          
BLAST of DR908165 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18
Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 3
Query:   63 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 437
            MK  + KGA K D    VK     + G  K   K  +           A KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++               +Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVK-----SKGAEKPAAKGKKGK---------AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN 111          
The following BLAST results are available for this feature:
BLAST of DR908165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN4.814e-2249.12HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI8.211e-2248.15HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE3.814e-1942.86DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA1.893e-1846.23HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT9.395e-1841.60HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16293 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908165 ID=DR908165; Name=DR908165; organism=Citrus sinensis; type=EST; length=706bp
TTCGGCTCTGCTTTTGTGTTCTTCGCTTCTCTTCTATCCGTCCAGGCATA
TCGCTTCTGAAAATGAAGGTTACCAGGGGCAAAGGAGCAGTCAAGAAGGA
CAAAAATGAAGTAGTGAAGCCTGTTGAGGACAGAGCTGCAGGAAAGCGAA
AGGCTGTGCTTAAAGCTAGTAGGAGTAGCAACAAGCGCACCAAGAATGTC
AAGTCAGCAAAGAAAGACCCTAACAAGCCGAAGAGGCCTCCTAGTGCTTT
TTTTGTTTTCCTAGAAGAGTTCAGAAAGGTTTACAAACAAGAGCATCCCA
ATGTTAAAGCTGTCTCAGCTGTGGGGAAAGCTGGGGGAGAGAAATGGAAG
TCGCTGACTGATGCAGAAAAAGCCCCATTTGAAGCAAAAGCAGCAAAAAG
GAAATTGGATTATGAAAAGCTGATGACAGCATACAACAAGAAACAGGAAA
GTACTGAAGATGAAGATGAAGAGGAGTCTGAGAAGTCAAAATCCGAGGTG
CATGACGACGATGATGATGAAGAACTTGAAGAGGAGGATGAAGAGGAGGA
CGACGACTAGATTCAGGAGCGCCACTGGGTATAGTTCCTTTGCTTTATCC
AGAAAAAATCCTGGACGTTGTATGACCATGCAGTTGGGTTATTTTGTGTT
TTTAACTATAAAAAAATCAACTCTTCGTTCTGCCAACTTGTAATGTAATG
CTGGTA
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