DR908162

Overview
NameDR908162
Unique NameDR908162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:191..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.425e-106
Identity = 190/235 (80.85%), Postives = 208/235 (88.51%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYRFVVR +NKDITAQIISASIAGD+VLASAY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEG+VEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P  KKS+K  P  HKRYNLKKLTY+E
Sbjct:   41 KNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDE 275          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 378.252 bits (970), Expect = 2.274e-104
Identity = 183/235 (77.87%), Postives = 206/235 (87.66%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EE+YKKVHAAIRA+PN KK+EK  P EHKRYNLKKLTYEE
Sbjct:   41 KNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEE 275          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 1.129e-103
Identity = 183/235 (77.87%), Postives = 205/235 (87.23%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EELYKKVHAAIRADPN KK+ K  P +HKRYNLKKLTYEE
Sbjct:   41 KNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEE 275          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 6.194e-102
Identity = 176/235 (74.89%), Postives = 202/235 (85.96%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+
Sbjct:   42 KNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQ 276          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 370.163 bits (949), Expect = 6.194e-102
Identity = 176/235 (74.89%), Postives = 202/235 (85.96%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+
Sbjct:   42 KNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQ 276          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.154e-98
Identity = 173/235 (73.62%), Postives = 198/235 (84.26%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYRFV   TNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEG+VEATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+
Sbjct:   45 KNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQ 276          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 3.102e-69
Identity = 128/235 (54.47%), Postives = 165/235 (70.21%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYR +VR TNKDI AQ+  + I GD+V+ASAYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D+ Y+GH E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK  +AE HR  I   HVA YM  L E++ ++Y+  F +++  G+ ADNL   Y+K HA IRADP+   S KK     KR+  K+LTY+E
Sbjct:   41 KNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEEDEDRYKRQFSKFLSNGMNADNLVATYQKAHANIRADPS--PSAKKAAKPSKRHTAKRLTYDE 273          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.027e-69
Identity = 126/235 (53.62%), Postives = 168/235 (71.49%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYR +VR TNKD+ AQ+  + I GD+V+ASAY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D+ Y+GH E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK+ +AE HR  I   HVA YM  L E++ ++Y+  F +++  G+ ADNL   Y+KVH+AIRAD +   + KK     KR+  K+LTY+E
Sbjct:   41 KNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADAS--PAAKKAAKPSKRHTAKRLTYDE 273          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.179e-68
Identity = 128/236 (54.24%), Postives = 167/236 (70.76%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYR V+RFTN DI  QII A I GD VL SAYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L +  +Y G  +  GED++VE   +  RPFRA LDVGL +TTTGNRVF            IPHS  RF G+ ++S QL+A+  R+YI+ GHV+ YM+ L E++ EKY++HF  +IK GI AD++E++Y+  HA IRA+P  +K + +     KR+N  K++ ++
Sbjct:   41 KNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEEDEEKYKAHFSRFIKEGITADSMEQMYRDAHAKIRANPAHEKKQPRDGLVKKRWNRAKMSLKQ 276          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.540e-68
Identity = 132/237 (55.70%), Postives = 167/237 (70.46%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEE 705
            KNKYNTPKYR +VR +NKDIT QI  A I GD V+ +AY+HELP+YG++VGLTNYAAAYCTGLL+ARRVL  L +D+ Y G  E TGE+++VEP ++    FR  LDVGL +TTTG RVF            IPHS KRF G+S ++K  +A+VHR +I+  HVA YMR+L E++ E ++  F  YIK GI AD+LE++YKK H AIR DP  K + KK  A   KR+N KKLT E+
Sbjct:   41 KNKYNTPKYRLIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQ 277          
The following BLAST results are available for this feature:
BLAST of DR908162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RL5_CUCSA1.425e-10680.8560S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH2.274e-10477.8760S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH1.129e-10377.8760S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSJ6.194e-10274.8960S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI6.194e-10274.8960S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ4.154e-9873.6260S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_CAEBR3.102e-6954.4760S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_CAEEL9.027e-6953.6260S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_SUBDO1.179e-6854.2460S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_DROME1.540e-6855.7060S ribosomal protein L5 OS=Drosophila melanogaste... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16290 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908162 ID=DR908162; Name=DR908162; organism=Citrus sinensis; type=EST; length=706bp
AAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAA
CAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAG
TCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTG
GGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCG
CCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTG
AGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCT
TTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCG
TGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTC
ACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGAC
GCTGAAGTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACAT
GAGGACTTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTG
AATACATCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAG
AAGGTACATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAA
GAAGCCTCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACG
AGGAAA
back to top