DR908150
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 1.102e-98 Identity = 183/229 (79.91%), Postives = 204/229 (89.08%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 688 +KFDFLGKDSIQYVNTVEVE VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL + SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL Sbjct: 671 IKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLL 898
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 7.161e-90 Identity = 179/257 (69.65%), Postives = 202/257 (78.60%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM-----LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPE----------------------ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLA 691 LKFDFLGKDSI+Y N VEVE V+ AI QF++GK+ DDLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD M L++ T GDVA K+ VYQ ANKEVAIICNHQRTVSK+HSAQM RL EKIE+LKG+LK+L+ DL R KGKPPL K+SDGK KRNL + ++ +K+AQTN KIEKMERD +TKEDLKTVALGTSKINYLDPRITVAWCKRH+VPIEKIFNKSLLA Sbjct: 521 LKFDFLGKDSIRYQNEVEVEPRVFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKLLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGLLKELQEDLTRVNKGKPPL-KNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKIAQTNTKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLA 776
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 5.360e-53 Identity = 113/228 (49.56%), Postives = 145/228 (63.60%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 682 ++FDFLGKDSI+Y N V VE VYK + F GK +DDLFD+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++VAI+CNHQR VSK M +L +KI+D K +K+ L K R E ++K + +++K++ K++ K +ALGTSK+NY+DPRITVAWCK+ EVP+EK+F K+ Sbjct: 574 VEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAAL----------------KSARGAEKEKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAWCKKFEVPLEKVFTKT 785
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 7.740e-52 Identity = 113/228 (49.56%), Postives = 149/228 (65.35%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 682 ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ E+ ++ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 527 VEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARRDL-KSAKADAKVMKDAKTKK----VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2) HSP 1 Score: 203.371 bits (516), Expect = 1.011e-51 Identity = 113/228 (49.56%), Postives = 149/228 (65.35%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 682 ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ E+ ++ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 525 VEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDL-KSAKADAKVMKDAKTKK----VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 747
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.252e-51 Identity = 113/228 (49.56%), Postives = 148/228 (64.91%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 682 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ E+ ++ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARKDL-KSAKADAKVMKDAKTKK----VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 2.941e-51 Identity = 113/228 (49.56%), Postives = 148/228 (64.91%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 682 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ E+ ++ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDL-KSAKADAKVMKDAKTKK----VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.941e-51 Identity = 113/228 (49.56%), Postives = 148/228 (64.91%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 682 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL ++ K +MKD+ K+ E+ ++ + + ++ K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDL-KSAKADAKVMKDAKTKK----VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1_XENLA (DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.460e-50 Identity = 113/235 (48.09%), Postives = 152/235 (64.68%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLASLLG 703 ++FDF GKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ LN HL++LM GLTAKVFRTYNASITL L++ T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R + K K D K K+ + E+ ++ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK++ VPIEKI+NK+ +LLG Sbjct: 581 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPDDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLDELTNSDDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQGKIDAKKDQLADARREF---KSAKADAKVRRDEKTKKLV--ESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKYGVPIEKIYNKTQRKNLLG 810
BLAST of DR908150 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 4.247e-50 Identity = 110/228 (48.25%), Postives = 140/228 (61.40%), Query Frame = 2 Query: 2 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 682 ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQR T M L KI+ K + + R +L RA+ DGK + L E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K+ Sbjct: 361 VEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEH---KAQGDGKSRSVL--EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKIYSKT 583 The following BLAST results are available for this feature:
BLAST of DR908150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DR908150 ID=DR908150; Name=DR908150; organism=Citrus sinensis; type=EST; length=709bpback to top |